Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sbal223_1339 |
Symbol | |
ID | 7088764 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella baltica OS223 |
Kingdom | Bacteria |
Replicon accession | NC_011663 |
Strand | + |
Start bp | 1571198 |
End bp | 1572235 |
Gene Length | 1038 bp |
Protein Length | 345 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 643460243 |
Product | twitching motility protein |
Protein accession | YP_002357270 |
Protein GI | 217972519 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG2805] Tfp pilus assembly protein, pilus retraction ATPase PilT |
TIGRFAM ID | [TIGR01420] pilus retraction protein PilT |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.0176269 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 4 |
Fosmid unclonability p-value | 0.0000000675214 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | ATGGAAATCA CTGAGTTATT GGCATTTAGT GTAAAACACA AAGCCTCGGA TCTACACCTT TCTGCAGGGA TATCTCCCAT GATCCGTGTC GACGGTGAAG TGAGAAAAAT TAACCTGCCC GCGCTCGATC ACCAAGGCGT ACACAGCCTA GTGTACGACA TAATGAATGA TAAGCAGCGC AAGGACTACG AAGAACATTT AGAAATCGAT TTCTCGTTCG AAGTCCCTAA TCTTGCACGC TTTCGTGTTA ACGCATTCAA TCAATCCCGT GGTGCTGCGG CCGTATTTCG TACCATTCCT AGCGACATCT TGTCACTTGA GCAATTAGGT GCGCCGGAGA TTTTTAAAAA AATCGCCAGT TTCCCTCGGG GATTAGTCCT AGTGACTGGA CCAACGGGTT CGGGTAAGAG TACCACACTT GCCGCTATGG TGGATTACGT TAACGAAAAT CGACACGATC ACATCTTAAC CATTGAAGAT CCTATCGAAT TCGTACACCA AAATAAGCAA TGTTTGATTA ACCAGCGTGA AGTTCACCGC CATACCCACA GCTTTAATGC GGCGCTTAGA AGCGCGCTGC GTGAAGATCC GGACGTGATT TTAGTTGGTG AGATGCGTGA CCTTGAAACC ATTCGTTTGG CGATGACCGC CGCAGAAACA GGCCACTTAG TGTTTGGTAC CTTGCATACC ACCTCCGCCG CGAAAACCAT TGACCGTGTG GTCGACGTAT TCCCCGCCGG TGAAAAAGAC ATGGTGCGCA CTATGTTGTC GGAATCGCTG CAAGCGGTTA TTTCGCAAAC CCTGATTAAA AAGGTAGGCG GAGGCCGTGT CGCCGCCCAT GAAATCATGA TGGGCACTCC CGCTATTCGT AACCTTATTC GTGAAGACAA AGTGGCGCAG ATGTATTCGG CGATTCAAAC CGGTATGGCC CACGGAATGC AGACCTTAGA GCAATGTTTA CAGAATTTAG TCAATCGCGG TCTTATCACC CGTGAAGATG CAATGGCGAA GAGTTCGAAT AAACAAGCGA CATTTTAA
|
Protein sequence | MEITELLAFS VKHKASDLHL SAGISPMIRV DGEVRKINLP ALDHQGVHSL VYDIMNDKQR KDYEEHLEID FSFEVPNLAR FRVNAFNQSR GAAAVFRTIP SDILSLEQLG APEIFKKIAS FPRGLVLVTG PTGSGKSTTL AAMVDYVNEN RHDHILTIED PIEFVHQNKQ CLINQREVHR HTHSFNAALR SALREDPDVI LVGEMRDLET IRLAMTAAET GHLVFGTLHT TSAAKTIDRV VDVFPAGEKD MVRTMLSESL QAVISQTLIK KVGGGRVAAH EIMMGTPAIR NLIREDKVAQ MYSAIQTGMA HGMQTLEQCL QNLVNRGLIT REDAMAKSSN KQATF
|
| |