| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal223_1241 |
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| Symbol | |
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| ID | 7088013 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella baltica OS223 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011663 |
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| Strand | + |
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| Start bp | 1466743 |
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| End bp | 1467876 |
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| Gene Length | 1134 bp |
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| Protein Length | 377 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 643460147 |
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| Product | tRNA pseudouridine synthase D TruD |
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| Protein accession | YP_002357174 |
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| Protein GI | 217972423 |
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| COG category | [S] Function unknown |
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| COG ID | [COG0585] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR00094] tRNA pseudouridine synthase, TruD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.148473 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.0000000000992324 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAGCGAAT TACATTATCT GTATGGCAAG CCTTTAGGTA CAGCAGATTT AAGAACCCAA
AATAGCGATT TTATCGTGAA AGAGATTTTA CCTTTTAGCC CAACGGGTGA AGGTGAACAT
CACATGCTGC ATGTACGCAA AGAAGGGCTA AATACAGTAC AAGTCGCTGA AATGATAGCT
AAGTTCGCTA AGGTGCATCC GAAGGAAGTG ACCTACGCTG GGCAAAAAGA TAAAAATGCC
ATCACAGAAC AATGGTTCGG TGTGCGTATT CCGGGTAAAG AGACACCGCT TTGGAAGGAG
CTCAATAGCG AACGTTTGAC TATATTGTCG AGCAGCCGTC ACAGCAAAAA ACTGCGAATT
GGTGCTTTAG TCGGTAACCG TTTTATTCTT ACCCTAAGAA ATGTCACCCA AGTCGAAGAC
ATTATCAGCC GTATCGAAAA GGTCGCTCAA GTGGGCGTGC CCAATTACTT TGGTGAGCAA
CGCTTTGGTC ACGATGGTAA AAACTTAGTT TTTGGTCGCC AAATGATGGC GGGTAAAAAA
GTCAAAGATA GAAATAAGCG CAGCATGTAC CTGTCTGCGG TGCGCTCAAA TCTGTTTAAC
ACTGTAGTGT CATATCGTTT AGCCAACCAT GGCACTAAGC CGCTAGCGGG TGATTGTGTG
ATGTTGGCGG GCAGCAAAAG CTTCTTCGTT ACGCCTGAAT GGGATCTCAT TGTGTTGAAA
CGTCTGATTG AAAAAGACAT TCAACTATCA GCACCATTAT GGGGCCGTGG CATGATGCTG
CCTCAAGGAG AAGCTGCTGC GGTGGAAACC TTGGCCATGA GTGAGTTGGC TGACGATTGC
TATGGCCTTG AACATGCGGG ATTAGAGCAA GAGCGTCGTC CGTTACTGCT TGAGCCCCAA
GCCCTTAAAT ACGAACAAAC CGCCGATGGT CTCGTGCTGG AGTTTGTGTT GCCTGCGGGC
AGTTTTGCCA CATCCTTGTT GAGAGAGTTA GTCAATTATC AAGATGTTAA AGAGCAGCAA
TGGCAAGCGA CACTGGTGCA GGAGCCTGCA CCAGAGGCAA CGAATGCTAA CGTTGCGGCT
GATACAATTG AAACTAAGAC TGAAGCTGCG CCTAACATTG AAGCAGAGTC ATGA
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| Protein sequence | MSELHYLYGK PLGTADLRTQ NSDFIVKEIL PFSPTGEGEH HMLHVRKEGL NTVQVAEMIA
KFAKVHPKEV TYAGQKDKNA ITEQWFGVRI PGKETPLWKE LNSERLTILS SSRHSKKLRI
GALVGNRFIL TLRNVTQVED IISRIEKVAQ VGVPNYFGEQ RFGHDGKNLV FGRQMMAGKK
VKDRNKRSMY LSAVRSNLFN TVVSYRLANH GTKPLAGDCV MLAGSKSFFV TPEWDLIVLK
RLIEKDIQLS APLWGRGMML PQGEAAAVET LAMSELADDC YGLEHAGLEQ ERRPLLLEPQ
ALKYEQTADG LVLEFVLPAG SFATSLLREL VNYQDVKEQQ WQATLVQEPA PEATNANVAA
DTIETKTEAA PNIEAES
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