| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal223_1224 |
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| Symbol | rumA |
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| ID | 7087996 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella baltica OS223 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011663 |
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| Strand | + |
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| Start bp | 1442541 |
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| End bp | 1443893 |
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| Gene Length | 1353 bp |
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| Protein Length | 450 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 643460133 |
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| Product | 23S rRNA 5-methyluridine methyltransferase |
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| Protein accession | YP_002357160 |
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| Protein GI | 217972409 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
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| TIGRFAM ID | [TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00249304 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.000020369 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGCGCAAT TTTTTAAAGC AAAACCAAAT AGTTCCAAAC AGTTGTCGGC TAAGTTATCG
CTGAGCGTCA ATCAGCTCGA TCACTTAGGG GCAGGTATAG CACAACATCA AGGTAAAGTC
GTGTTTATCC CCGGCGCACT GCCCGATGAA ACCGTGACGG TACAACTCAC CGAGCAAAAG
AAAAATTATG CCCGCGCTAA GTTAATTAAA GTCGATACAC CTAGCTCTGA GCGCGTAGCG
CCCGAGTGTC CACACTATCA CACCTGCGGC GGCTGCGACT TACAGCATAT GTCATTATCG
GGTCAGCGGG AGCATAAAGA AGCGGCGCTG CTGGATATTA TGGCGAAGTT TGCCGGTGCC
GAAGGCGGCA CGTTATCACC CGCACTCACG GGTGAAGGTT GGCATTATCG TCGCCGTGCC
CGTCTTGCGA CTTTGTTTGA TAAAAATACC AAACACTTAA GCTTAGGTTT TCGTGCCGCT
AGTAGCAGCA ATGTGGTGCC TATCAGCCAG TGTCAGGTGT TAGCTAAGCC GTTATCGGAC
TTGATCGTCC CCTTTGCTAA GTTGCTGAAT CAATTGTCGG CTAAAGCCAG CTTAGGCCAC
CTTGAGTTGA TTGCCGCCGA TAATGGTCAC TTCGCCGTGC TGCGTATCAC TAAGGCGCTA
AACGATAAAG ATCTGGCTAA GTTGTCAGCC TTTGCCGAGC AGCATCAAAT CCACATTTGT
CTGCAGGATA ATGAAGGCCA ATTCCAAGGC GTTGGCGCTG AGTTAGTGTT ACCGGTTTAT
CAGCTGTTAG ATGACAAAGC TGAGTCGGAT GCGGTGAGTT TAAGCTTCAC CCCAGGTAAC
TTTGTGCAAG TGAACGGACA GATTAACAAG GCCATGGTCG CTCAAGCGAT GGATTGGTTA
GCGCCAGCGC CTGATGAGCG CATTTTGGAT TTGTTCTGCG GCATGGGTAA TTTCAGTTTG
CCCTTAGCGA AAATGGGCGC GGATGTGATT GGCGTCGAAG GGGTTGCCGA AATGGTAACT
CAGGCACGGG TGAACGCTAA AGCTAACAAT TTGGATAAAC TGACCTTTTA TCACGGCGAC
TTGAGTGCGG ATTTATCCCT TGAGCCTTGG ATGGGCAAAA TTGATAAATT ACTGCTCGAT
CCTGCCCGTG CTGGGGCATT TGAAAGCTTG CAATGGCTGA AGAAAATGAA GCCGCGCAAA
GTCGTGTATG TTTCGTGTAA TCCTGCGAGC TTGGCCCGCG ATAGCGCTGT ACTGTTAGAG
CGCGGTTACC GATTACAGCA ATTGGGACTT ATCGACATGT TCCCACAAAC ACACCATATC
GAAGCCATGG CACTGTTTGA ATTAACCAAG TAA
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| Protein sequence | MAQFFKAKPN SSKQLSAKLS LSVNQLDHLG AGIAQHQGKV VFIPGALPDE TVTVQLTEQK
KNYARAKLIK VDTPSSERVA PECPHYHTCG GCDLQHMSLS GQREHKEAAL LDIMAKFAGA
EGGTLSPALT GEGWHYRRRA RLATLFDKNT KHLSLGFRAA SSSNVVPISQ CQVLAKPLSD
LIVPFAKLLN QLSAKASLGH LELIAADNGH FAVLRITKAL NDKDLAKLSA FAEQHQIHIC
LQDNEGQFQG VGAELVLPVY QLLDDKAESD AVSLSFTPGN FVQVNGQINK AMVAQAMDWL
APAPDERILD LFCGMGNFSL PLAKMGADVI GVEGVAEMVT QARVNAKANN LDKLTFYHGD
LSADLSLEPW MGKIDKLLLD PARAGAFESL QWLKKMKPRK VVYVSCNPAS LARDSAVLLE
RGYRLQQLGL IDMFPQTHHI EAMALFELTK
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