| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal223_1135 |
|---|
| Symbol | prfC |
|---|
| ID | 7087588 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS223 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011663 |
|---|
| Strand | + |
|---|
| Start bp | 1335824 |
|---|
| End bp | 1337404 |
|---|
| Gene Length | 1581 bp |
|---|
| Protein Length | 526 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 643460046 |
|---|
| Product | peptide chain release factor 3 |
|---|
| Protein accession | YP_002357073 |
|---|
| Protein GI | 217972322 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG4108] Peptide chain release factor RF-3 |
|---|
| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00503] peptide chain release factor 3 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.0000115855 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 0 |
|---|
| Fosmid unclonability p-value | 0.00000000000672446 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | unclonable |
|---|
| |
Sequence |
| Gene sequence | ATGTCAGGCA ATAAAGTAGA GGTCGATAAA CGTCGCACCT TCGCGATCAT ATCGCACCCC
GACGCGGGTA AAACAACCAT TACCGAAAAA GTGCTGTTAT TCGGAAACGC TTTGCAAAAA
GCGGGAACGG TTAAAGGCAA AAAATCGGGT CAGCATGCTA AGTCTGACTG GATGGAAATG
GAGAAGGACC GTGGTATTTC TATTACTACG TCTGTGATGC AATTCCCCTA TGGTGGCGCC
CTCGTTAACC TACTCGACAC GCCTGGTCAC GAAGACTTCT CTGAAGATAC CTATCGTACT
CTGACCGCTG TTGACTCTTG TCTGATGGTC ATCGACTCCG CTAAGGGTGT TGAAGAGCGT
ACCATTAAGT TGATGGAAGT GACACGTCTG CGCGATACGC CGATCGTGAC TTTTATGAAC
AAACTCGACC GCGATATCCG TGATCCTATC GATCTGATGG ATGAAGTCGA AAGCGTGCTG
AATATTGCCT GCGCACCTAT TACTTGGCCT ATTGGCAGCG GTAAAGAATT CAAAGGTATT
TACCATATAC TGCGTGATGA AGTGGTCTTG TATCAAGGCG GTATGGGACA CACTATTCAA
GATCGTCGTG TAATTAAAGG CATTAATAAC CCTGATCTTG AGAAAGCGAT TGGCAGTTAC
GCTGCTGATT TGCGCGATGA GATGGAATTA GTGCGCGGCG CGTCGCATGA ATTTGACCAT
GCGGCTTTCT TGAAAGGTGA GCTGACGCCA GTGTTCTTCG GTACCGCGTT AGGTAACTTT
GGTGTGGATC ATATTCTTGA CGGTATCGTT GAGTGGGCAC CTAAGCCATT ACCGCGCGAA
AGCGATGCAC GCGTAGTTAT GCCTGAAGAA GAGAAATTCA CCGGTTTCGT GTTCAAGATA
CAAGCAAACA TGGATCCAAA ACACCGTGAC CGTGTCGCCT TTATGCGTGT GTGTTCTGGC
CGTTACGAGC AAGGCATGAA AATGCACCAT GTGCGTATTG GTAAAGATGT TAACGTTAGC
GATGCATTGA CCTTTATGGC GGGCGATCGT GAGCGCGCTG AAGAAGCTTA CCCAGGCGAT
ATCATCGGTT TACATAACCA TGGCACTATC CGTATTGGCG ATACTTTTAC CCAAGGTGAA
AAATTCCGTT TCACTGGCGT GCCTAACTTC GCCCCTGAAA TGTTCCGCCG TATTCGTCTG
CGCGATCCGC TTAAGCAAAA ACAGCTCTTA AAAGGCTTAG TACAGTTGTC AGAAGAAGGC
GCTGTGCAAG TATTCCGCCC AATCGATACT AACGATTTAA TTGTTGGCGC CGTGGGTGTG
CTGCAGTTTG AAGTGGTTGT TGGTCGTCTT AAGAGCGAAT ATAACGTTGA AGCCATTTAC
GAAGGTATTA GTGTTTCGAC CGCTCGCTGG GTTTATTGTA AGGATGAGCG TAAGCTTGAA
GAGTTCCGCC GCAAGTGTAG CCAAAACTTA GCACTCGATG GTGGTGACAA CTTAACCTAT
ATTGCGCCAA CTATGGTCAA CCTGAATCTT TCGATGGAAA GGTATCCTGA TATTGAGTTT
GCAAAAACCC GCGAGCACTA A
|
|---|
| Protein sequence | MSGNKVEVDK RRTFAIISHP DAGKTTITEK VLLFGNALQK AGTVKGKKSG QHAKSDWMEM
EKDRGISITT SVMQFPYGGA LVNLLDTPGH EDFSEDTYRT LTAVDSCLMV IDSAKGVEER
TIKLMEVTRL RDTPIVTFMN KLDRDIRDPI DLMDEVESVL NIACAPITWP IGSGKEFKGI
YHILRDEVVL YQGGMGHTIQ DRRVIKGINN PDLEKAIGSY AADLRDEMEL VRGASHEFDH
AAFLKGELTP VFFGTALGNF GVDHILDGIV EWAPKPLPRE SDARVVMPEE EKFTGFVFKI
QANMDPKHRD RVAFMRVCSG RYEQGMKMHH VRIGKDVNVS DALTFMAGDR ERAEEAYPGD
IIGLHNHGTI RIGDTFTQGE KFRFTGVPNF APEMFRRIRL RDPLKQKQLL KGLVQLSEEG
AVQVFRPIDT NDLIVGAVGV LQFEVVVGRL KSEYNVEAIY EGISVSTARW VYCKDERKLE
EFRRKCSQNL ALDGGDNLTY IAPTMVNLNL SMERYPDIEF AKTREH
|
|---|
| |