Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sbal223_1117 |
Symbol | secD |
ID | 7087570 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella baltica OS223 |
Kingdom | Bacteria |
Replicon accession | NC_011663 |
Strand | + |
Start bp | 1313261 |
End bp | 1315075 |
Gene Length | 1815 bp |
Protein Length | 604 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 643460028 |
Product | preprotein translocase subunit SecD |
Protein accession | YP_002357055 |
Protein GI | 217972304 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0342] Preprotein translocase subunit SecD |
TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family [TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.425864 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 1 |
Fosmid unclonability p-value | 0.000000000194648 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGAAAGAA AACCCAATAA ACGGCTGCTA AATCACTATT CAGCTTGGAA ATATATAGTT CTTATCGTCA CCATCATTGT TATGTTATTC AGTGCCTTGC CGACATTTTA TGGTGAGGAT GCCGCGGTGC AAGTGGGCGC GAAGGCGGGG TTAACACTCA CGCCCGTAGC CCTTAGAGAT AAGCTGCAAG CTGAAGGCGT GACGGTAAAA CGCATCGACC AAAAGAATGG CGAAACCCTG ATTGTCCTCG ATGCGGATAA CCAACAAACC TTAGTCAAAA CCTTGGTTTC GTCTATGGTG ACAGAGCCAA AAGAGTTGAC CTTATCCCTT GCCAGTGCCG CGCCGAGTTG GTTGCAAAAC TTAGGTTTTC AGCCGATTAA ACTAGGGCTC GACTTACGTG GTGGGGTGCA GTTTCTACTC GATGTGGATG TTGACCCTGT GTACCAAACT CAGGGTGAGG CGTTAGTTGA TTCGCTACGC CAATTCATCC GTGAGCAGAA GATCCGTGGC GCCAGCGTCT ATTTGGATCA AACTAACCAG TTAAACCTGA CGCTGCCCGA TAATGACGCC CGCGCCGCCG TGCGTCAGAT GATGAAACAG TCCTATCCAA ATTGGCAATT ATCCAATACC GATGGCGCGG GTTTACAGAT TAAGTTGAGT CAAGAGGAAC AAACTAAACT GCGTAATTTG ACTGTGCAGC AAAACTTGCA AGTTATGCGC AGTCGTATTG AAGAACTTGG CATCACAGAA GCCTTAGTAC AGCGCCAAGG CGATCATCGA ATTCGGATTG AGTTGCCTGG CGTGCAAGAT CCTGCAGCCG CGAAAAACGT CATTGGTGCT ACAGCGAGTC TGGCTTTCTT TGAGGTGAAA GAGTCAGGTT CTGTGAATGC CATGGTGCTT AACGACAAGT CGGGTAAGCC TATTTATGTG AGCCGCACGC CAGTACTGGG CGGCGATCAC ATTGTCGATG CCAGAGCGAG TTTAGGTGAG ATGGGCATGG CCGAGGTGAA CATTAACCTC GACCGTGTCG GCGGGCAGAA AATGTCTGAG TTTTCCCGTA CCAATATTGG CAAACCTATG GCGACGTCTT ACAGCGAATA CAGCCGTGAT GAACAAGGTA AGGCTAAGCA AACTCAAGAG ATTATCAGCG TCGCGACCAT TCAATCCCAG CTTGGAGACC GCTTCCGCAT CACTGGCGCT GGCACCTATC AAGAAGCGCA GCAATTAGCC CTGTTACTAA GAGCGGGTTC TATGACGGCG CCAGTGACGA TTGTGGAAGA GCGTACCATT GGCCCGACGT TAGGCGCTGA AAACATTGAA AACGGTTTTG CTGCGCTCGG TCTAGGTATG GGCATTACCT TGTTGTTTAT GGCGCTTTGG TATCGCCGTC TCGGTTGGGT GGCGAATATC GCGCTGATCT CTAACATGGT GATCTTGTTT GGCCTACTGG CGCTTATCCC TGGTGCTGTG CTGACCTTAC CCGGTATTGC TGGCCTAGTG TTAACCGTGG GTATGGCTGT CGATACCAAC GTGCTGATTT TTGAGCGAAT AAAAGACAAG TTAAAAGAAG GTCGCAGTTT TGCGCTGGCA ATTGATACGG GGTTTGATAG TGCGTTTTCG ACCATTTTCG ACGCTAACTT CACCACTATG ATCACTGCTG TCGTGCTGTA TTCCATCGGT AATGGCCCCA TTCAAGGTTT CGCCTTGACC TTAGGTCTAG GTCTGTTGAC CAGCATGTTT ACCGGTATCT TTGCTTCAAG AGCCTTGATT AACTTAGTTT ACGGACGTGA TGTTAGTCGT CATGTGAGGG TATAA
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Protein sequence | MERKPNKRLL NHYSAWKYIV LIVTIIVMLF SALPTFYGED AAVQVGAKAG LTLTPVALRD KLQAEGVTVK RIDQKNGETL IVLDADNQQT LVKTLVSSMV TEPKELTLSL ASAAPSWLQN LGFQPIKLGL DLRGGVQFLL DVDVDPVYQT QGEALVDSLR QFIREQKIRG ASVYLDQTNQ LNLTLPDNDA RAAVRQMMKQ SYPNWQLSNT DGAGLQIKLS QEEQTKLRNL TVQQNLQVMR SRIEELGITE ALVQRQGDHR IRIELPGVQD PAAAKNVIGA TASLAFFEVK ESGSVNAMVL NDKSGKPIYV SRTPVLGGDH IVDARASLGE MGMAEVNINL DRVGGQKMSE FSRTNIGKPM ATSYSEYSRD EQGKAKQTQE IISVATIQSQ LGDRFRITGA GTYQEAQQLA LLLRAGSMTA PVTIVEERTI GPTLGAENIE NGFAALGLGM GITLLFMALW YRRLGWVANI ALISNMVILF GLLALIPGAV LTLPGIAGLV LTVGMAVDTN VLIFERIKDK LKEGRSFALA IDTGFDSAFS TIFDANFTTM ITAVVLYSIG NGPIQGFALT LGLGLLTSMF TGIFASRALI NLVYGRDVSR HVRV
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