Gene Sbal223_1117 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSbal223_1117 
SymbolsecD 
ID7087570 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella baltica OS223 
KingdomBacteria 
Replicon accessionNC_011663 
Strand
Start bp1313261 
End bp1315075 
Gene Length1815 bp 
Protein Length604 aa 
Translation table11 
GC content49% 
IMG OID643460028 
Productpreprotein translocase subunit SecD 
Protein accessionYP_002357055 
Protein GI217972304 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0342] Preprotein translocase subunit SecD 
TIGRFAM ID[TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.425864 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000000000194648 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGAAAGAA AACCCAATAA ACGGCTGCTA AATCACTATT CAGCTTGGAA ATATATAGTT 
CTTATCGTCA CCATCATTGT TATGTTATTC AGTGCCTTGC CGACATTTTA TGGTGAGGAT
GCCGCGGTGC AAGTGGGCGC GAAGGCGGGG TTAACACTCA CGCCCGTAGC CCTTAGAGAT
AAGCTGCAAG CTGAAGGCGT GACGGTAAAA CGCATCGACC AAAAGAATGG CGAAACCCTG
ATTGTCCTCG ATGCGGATAA CCAACAAACC TTAGTCAAAA CCTTGGTTTC GTCTATGGTG
ACAGAGCCAA AAGAGTTGAC CTTATCCCTT GCCAGTGCCG CGCCGAGTTG GTTGCAAAAC
TTAGGTTTTC AGCCGATTAA ACTAGGGCTC GACTTACGTG GTGGGGTGCA GTTTCTACTC
GATGTGGATG TTGACCCTGT GTACCAAACT CAGGGTGAGG CGTTAGTTGA TTCGCTACGC
CAATTCATCC GTGAGCAGAA GATCCGTGGC GCCAGCGTCT ATTTGGATCA AACTAACCAG
TTAAACCTGA CGCTGCCCGA TAATGACGCC CGCGCCGCCG TGCGTCAGAT GATGAAACAG
TCCTATCCAA ATTGGCAATT ATCCAATACC GATGGCGCGG GTTTACAGAT TAAGTTGAGT
CAAGAGGAAC AAACTAAACT GCGTAATTTG ACTGTGCAGC AAAACTTGCA AGTTATGCGC
AGTCGTATTG AAGAACTTGG CATCACAGAA GCCTTAGTAC AGCGCCAAGG CGATCATCGA
ATTCGGATTG AGTTGCCTGG CGTGCAAGAT CCTGCAGCCG CGAAAAACGT CATTGGTGCT
ACAGCGAGTC TGGCTTTCTT TGAGGTGAAA GAGTCAGGTT CTGTGAATGC CATGGTGCTT
AACGACAAGT CGGGTAAGCC TATTTATGTG AGCCGCACGC CAGTACTGGG CGGCGATCAC
ATTGTCGATG CCAGAGCGAG TTTAGGTGAG ATGGGCATGG CCGAGGTGAA CATTAACCTC
GACCGTGTCG GCGGGCAGAA AATGTCTGAG TTTTCCCGTA CCAATATTGG CAAACCTATG
GCGACGTCTT ACAGCGAATA CAGCCGTGAT GAACAAGGTA AGGCTAAGCA AACTCAAGAG
ATTATCAGCG TCGCGACCAT TCAATCCCAG CTTGGAGACC GCTTCCGCAT CACTGGCGCT
GGCACCTATC AAGAAGCGCA GCAATTAGCC CTGTTACTAA GAGCGGGTTC TATGACGGCG
CCAGTGACGA TTGTGGAAGA GCGTACCATT GGCCCGACGT TAGGCGCTGA AAACATTGAA
AACGGTTTTG CTGCGCTCGG TCTAGGTATG GGCATTACCT TGTTGTTTAT GGCGCTTTGG
TATCGCCGTC TCGGTTGGGT GGCGAATATC GCGCTGATCT CTAACATGGT GATCTTGTTT
GGCCTACTGG CGCTTATCCC TGGTGCTGTG CTGACCTTAC CCGGTATTGC TGGCCTAGTG
TTAACCGTGG GTATGGCTGT CGATACCAAC GTGCTGATTT TTGAGCGAAT AAAAGACAAG
TTAAAAGAAG GTCGCAGTTT TGCGCTGGCA ATTGATACGG GGTTTGATAG TGCGTTTTCG
ACCATTTTCG ACGCTAACTT CACCACTATG ATCACTGCTG TCGTGCTGTA TTCCATCGGT
AATGGCCCCA TTCAAGGTTT CGCCTTGACC TTAGGTCTAG GTCTGTTGAC CAGCATGTTT
ACCGGTATCT TTGCTTCAAG AGCCTTGATT AACTTAGTTT ACGGACGTGA TGTTAGTCGT
CATGTGAGGG TATAA
 
Protein sequence
MERKPNKRLL NHYSAWKYIV LIVTIIVMLF SALPTFYGED AAVQVGAKAG LTLTPVALRD 
KLQAEGVTVK RIDQKNGETL IVLDADNQQT LVKTLVSSMV TEPKELTLSL ASAAPSWLQN
LGFQPIKLGL DLRGGVQFLL DVDVDPVYQT QGEALVDSLR QFIREQKIRG ASVYLDQTNQ
LNLTLPDNDA RAAVRQMMKQ SYPNWQLSNT DGAGLQIKLS QEEQTKLRNL TVQQNLQVMR
SRIEELGITE ALVQRQGDHR IRIELPGVQD PAAAKNVIGA TASLAFFEVK ESGSVNAMVL
NDKSGKPIYV SRTPVLGGDH IVDARASLGE MGMAEVNINL DRVGGQKMSE FSRTNIGKPM
ATSYSEYSRD EQGKAKQTQE IISVATIQSQ LGDRFRITGA GTYQEAQQLA LLLRAGSMTA
PVTIVEERTI GPTLGAENIE NGFAALGLGM GITLLFMALW YRRLGWVANI ALISNMVILF
GLLALIPGAV LTLPGIAGLV LTVGMAVDTN VLIFERIKDK LKEGRSFALA IDTGFDSAFS
TIFDANFTTM ITAVVLYSIG NGPIQGFALT LGLGLLTSMF TGIFASRALI NLVYGRDVSR
HVRV