| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal223_0842 |
|---|
| Symbol | |
|---|
| ID | 7088078 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS223 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011663 |
|---|
| Strand | + |
|---|
| Start bp | 985076 |
|---|
| End bp | 986530 |
|---|
| Gene Length | 1455 bp |
|---|
| Protein Length | 484 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 643459756 |
|---|
| Product | diguanylate cyclase with extracellular sensor |
|---|
| Protein accession | YP_002356783 |
|---|
| Protein GI | 217972032 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.105968 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.00226884 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGAATTGC GTGACTTATT GAGGTTATTG CCGCTATTGA TGTGTATGCC ATTACTGGCT
CATGCTGACC GTTTAGCGAT GGCGAATGCT AAGCTTGCTA GCCAAGACGT TAGCGTTAGC
ATGACTCAGA CAGTCCGTTA TTGTGTTGAT CCTGACTGGT TACCCTATGA AGGAATCCGA
GAGGGTAAAC ATCTGGGTAT TTCGTCAGAC TATATTGATT ATATCGAATC GCATTCTTCC
CTTAAGTTTC AGCTGGTGCC GACTTCCTCT TGGACAGAGA CCTTATCTTT TTTGCAAAGC
GGGCAATGTG ATTTAACCCC TATGCTGAAT AAAACCTTGA TACGAGAGAC GTATCTGCAC
TTCAGTTATG TCTATTTCCG CTCTCCTAAT GTATTGGTGT CACTTAAAGA TCAGCCTTTC
ATGCAAGGAT TTGAGAATAT TGGGGCGCGT ACTTTAGCCG TGCCAAAAGG TTATCGTTTA
GCCGAATATA TTCAGCATTA TTATCCTCAA ATTGAGACGC TTACCGTGGC CAGTGAGCCA
GCAGGATTGC AGTCGGTGCT GGATAAACGT GCCGATCTGT TTGTGGGATC GATGTTTTCG
GTTAACTCCT ACATTCAACA GACGGGATTT AATCATTTGA AAATAGCCGG TTGGGGCGGA
CCAGAAGATG AGTTGCGGAT GGGGGTTGCC TATGGTCAAG AGTCCTTGTT ACCTGTGATA
AATAAGGCCT TAAATACTGT GAGTGAGCAG GAGCGGATCT TGATTTATCA GAAGTGGAAT
AATGTGACTG TCATAGATGA GACTAACTAT TCGCTTGTTT ATCAAGTTAT CTGCGCGACG
TGTTTGTTAT TGCTAATGTT GGGGGCAAGA ACTTACTTTA TCAGCCAGTA CAACCGTAGA
CTCACCGATA AGAATCAGCA GCTCGAAACC TTACGACAGC AGCTTGAGGC TTCAAATGCC
GAACTCGAGT TTTTATCTAC CCATGATCCC CTGACCAAGT TGTATAACCG ACATTACTTT
AATCGCCTTT TTATTAATAA CGAGCAGCAT GATAAATCTG CCAGAGCAGG CATGTGCCTG
GTGATGATTG ATATCGATTA CTTTAAAGAG ATTAATGACA CGCTAGGTCA TAACGTCGGG
GATCGGATCC TTGAGCAAGT GTCGCAGGTG CTACAGCACT GTGTGCGTGA ATCTGATGTG
GTTGCCCGTT GGGGCGGCGA AGAGTTTGTG ATCCTCTGTC AGCAGTCATC TTTACCCTTA
GTTGAAAGCT TGTGTGTGCG GATAGCAGAG AGGATCAAAC ATTATCAATT TACTGACAAT
GTGCAGTTAA CCTGCAGTTT TGGCGTCGCT AAGCTTGCCG ATAACGAACC TATGATGTTG
TGCTTTGAAC GTGCCGATCG CGCGCTTTAT CGTGCTAAAG CGCAAGGGCG TAATCAAATG
TGCACCCACA AGTAA
|
|---|
| Protein sequence | MELRDLLRLL PLLMCMPLLA HADRLAMANA KLASQDVSVS MTQTVRYCVD PDWLPYEGIR
EGKHLGISSD YIDYIESHSS LKFQLVPTSS WTETLSFLQS GQCDLTPMLN KTLIRETYLH
FSYVYFRSPN VLVSLKDQPF MQGFENIGAR TLAVPKGYRL AEYIQHYYPQ IETLTVASEP
AGLQSVLDKR ADLFVGSMFS VNSYIQQTGF NHLKIAGWGG PEDELRMGVA YGQESLLPVI
NKALNTVSEQ ERILIYQKWN NVTVIDETNY SLVYQVICAT CLLLLMLGAR TYFISQYNRR
LTDKNQQLET LRQQLEASNA ELEFLSTHDP LTKLYNRHYF NRLFINNEQH DKSARAGMCL
VMIDIDYFKE INDTLGHNVG DRILEQVSQV LQHCVRESDV VARWGGEEFV ILCQQSSLPL
VESLCVRIAE RIKHYQFTDN VQLTCSFGVA KLADNEPMML CFERADRALY RAKAQGRNQM
CTHK
|
|---|
| |