| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal223_0728 |
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| Symbol | |
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| ID | 7088120 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella baltica OS223 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011663 |
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| Strand | + |
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| Start bp | 866050 |
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| End bp | 868473 |
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| Gene Length | 2424 bp |
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| Protein Length | 807 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 643459640 |
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| Product | ribonuclease R |
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| Protein accession | YP_002356670 |
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| Protein GI | 217971919 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.14505 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.000000257568 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGATCAAAG ACCCTCATTT TGAGCGTGAA CAGGATAAGT ACGAAAACCC TATCCCAAGC
CGTGAGTATA TTATCGATTA CTTACGTTCT CAGAAATCAC CTATCACTCG TGACAGTATT
GCCGCGGCGT TAAACATCCA AGAGGAAGAA CAACTTGAGG CCCTGCGCCG TCGCCTACGT
GCGATGGAAC GCGATGGCGA ACTCGTGTTC ACCCGTGGGC AGAGCTATGG CTTGCCCGAG
AAAATGGATC TTATCCCCGG CACTGTACTC GGACACAGAG AAGGCTTCGG CTTTTTCAAA
CCCGATGAAG GCGGTGATGA CTTATTTATT TCGAACCGCG ATATGCTGAT GTATTTCCAC
GGTGATAAAG TGCTCGCGCA AAAAGCGGGC ACAGATCGTC GTGGTCGCCG CGAAGCGCGT
TTGGTGCGTT TGATCCAGCC GCGCAGTGCC GCGATTGTTG GCCGTTATCA TGTCGATAGC
GGTATGGCAT TTGTCATTGC CGATGATAAG CGTATAACCC AAGAAATCTT AGTCGCGAAT
GAAGACCGCA ACGGCGCCCG TCAAGGCGAT GTGGTTGTGG TTGAATTAAC GCGTCGCCCA
GGTCGTTTTG TTAAGGCTGC GGGTAAAGTG ACAGAAGTGC TTGGTAAGCA AATGGCGCCG
GGGATGGAAA TCGAAATCGC CCTGCGTAAC TATGACTTAC CCCATACTTG GTCACCTGTG
ATCGAGAAGA AACTGCGCCG AATTCCTGAT GAAGTGACCG ATGCCGATAA AGTCGGCCGT
GTAGATTTAC GTCATCTGCC ATTAGTGACT ATCGACGGTG AAGACGCTCG CGATTTTGAC
GATGCCGTGT ATGCGGAGAA AAAAGCCGGT GGCGGCTGGC GTTTATGGGT TGCGATTGCT
GACGTTAGTT ATTATGTTCG CACCGATTCG GCTTTAGATA CCGAAGCGCG TGCCCGTGGT
AACTCAGTGT ATTTCCCATC GCAAGTGATC CCTATGCTGC CGGAGAAAAT CTCCAACGGC
CTATGTTCGC TTAATCCTCA CGTCGACCGT TTATGTATGG TCGCCGAGAT GACAGTGTCT
GCCAAAGGCA AGTTGTCGGG TTATAAGTTT TATCCGGCTG TGATGTATTC CCATGCCCGT
TTCACTTATA CCCAAGTGGC TGAGATGTTA GAAGGCGGCC CGATTGCGCC TGAGCATGAA
GCCTTGTTCC CGCATCTGCA GTGTTTACAG TCATTGTATT TAGCGCTAGA TGAGCAAAGA
GCTGAGCGTG GTGCGATTGC GTTTGAAACC ATGGAAACGC AGTTCATTTT CAATGAGCAG
CGCAAGATTG ATAAAATCGT GCCGCGTGGC CGTAATCAAG CACATAAAAT CATTGAAGAA
TGCATGATTT TAGCCAACGT TTCTGCAGCT AAATTTGTGA AGAAACACAA AGGCGACGTG
CTGTACCGAG TGCATGAAGC GCCATCTGAG CAAAAGTTGG CGAACTTTAA AGAGTTCCTT
GCTGAGCGTG GTTTGACTAT GCCTGGCGGA CTTGAGCCAA CGCCGTCTGA TTACCAGAAC
GTGATGCTGC AAATTGCCGA CCGTCCCGAT GCTGAACTTA TCCAAGTGAT GTTGCTGCGC
TCTATGCGTC AGGCAATTTA CACCCCAGAT AATGAAGGTC ACTTCGGTCT AGCCTTAGAA
GAATATGCGC ATTTTACCTC GCCCATTCGC CGTTATCCGG ATTTAGTCTT ACATCGTGTG
ATCCGTTATT TACTGGCGAA AGAAAGAGGC GAAGCCACAG AGAAGTGGAC GCAGGATGGT
GGCTACCACT ATCAACTCGA TGAACTCGAC CAATTGGGCG AAGAGTGTTC GACTACAGAG
CGTCGTGCCG ATGAAGCGAC TCGTGATGTT AGCGATTGGC TCAAGTGCGA GTTTATGCAA
GATCACGTCG GCGATACCTT CGAAGCTGTG ATTGCCTCAG TGACGAGCTT TGGTTTGTTC
GTGCGCTTAA ATGAGCTGTT TATCGATGGC TTAGTGCATA TCTCAAGCCT AGGTAGCGAT
TACTACCAAT TCGATCCTAT GCGTCAACGC CTTATCGGTG AGCATACAGG CCAAGTCTAT
CAAGTGGGCG ATCCTGTGAC GGTTAAGGTC GCTGCTGTTA ACTTAGATGA CAGACAGATT
GATTTAGTCA TGCTGGGCGA TGACGGCAAA GGTGGCAAGC GTAAAGCCTC TGCCAGCCGT
GATAAGCCGA TGACTGCCCG TGAGCGTGTT AATCGCGAAG GTGCTAAGCA AGGCAAAGCG
GGTAAAACCG CAACCCCTAG CACTAAGGCT GAAGCTGGCA AAGCCAAACC TAAGGCTAAA
GCGGGCACTA AAGCGAAAAA GACAGCAGTA AAAGATCCGG CTAAAAAGCC AAAAGCCGCT
AAGCGGAGCA CGAGAAAGAA ATAA
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| Protein sequence | MIKDPHFERE QDKYENPIPS REYIIDYLRS QKSPITRDSI AAALNIQEEE QLEALRRRLR
AMERDGELVF TRGQSYGLPE KMDLIPGTVL GHREGFGFFK PDEGGDDLFI SNRDMLMYFH
GDKVLAQKAG TDRRGRREAR LVRLIQPRSA AIVGRYHVDS GMAFVIADDK RITQEILVAN
EDRNGARQGD VVVVELTRRP GRFVKAAGKV TEVLGKQMAP GMEIEIALRN YDLPHTWSPV
IEKKLRRIPD EVTDADKVGR VDLRHLPLVT IDGEDARDFD DAVYAEKKAG GGWRLWVAIA
DVSYYVRTDS ALDTEARARG NSVYFPSQVI PMLPEKISNG LCSLNPHVDR LCMVAEMTVS
AKGKLSGYKF YPAVMYSHAR FTYTQVAEML EGGPIAPEHE ALFPHLQCLQ SLYLALDEQR
AERGAIAFET METQFIFNEQ RKIDKIVPRG RNQAHKIIEE CMILANVSAA KFVKKHKGDV
LYRVHEAPSE QKLANFKEFL AERGLTMPGG LEPTPSDYQN VMLQIADRPD AELIQVMLLR
SMRQAIYTPD NEGHFGLALE EYAHFTSPIR RYPDLVLHRV IRYLLAKERG EATEKWTQDG
GYHYQLDELD QLGEECSTTE RRADEATRDV SDWLKCEFMQ DHVGDTFEAV IASVTSFGLF
VRLNELFIDG LVHISSLGSD YYQFDPMRQR LIGEHTGQVY QVGDPVTVKV AAVNLDDRQI
DLVMLGDDGK GGKRKASASR DKPMTARERV NREGAKQGKA GKTATPSTKA EAGKAKPKAK
AGTKAKKTAV KDPAKKPKAA KRSTRKK
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