| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal223_0253 |
|---|
| Symbol | |
|---|
| ID | 7085912 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS223 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011663 |
|---|
| Strand | + |
|---|
| Start bp | 290375 |
|---|
| End bp | 292333 |
|---|
| Gene Length | 1959 bp |
|---|
| Protein Length | 652 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 643459176 |
|---|
| Product | GAF modulated sigma54 specific transcriptional regulator, Fis family |
|---|
| Protein accession | YP_002356213 |
|---|
| Protein GI | 217971462 |
|---|
| COG category | [K] Transcription
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG3284] Transcriptional activator of acetoin/glycerol metabolism |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.0000233378 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGGCAGTTA AACCGCATTT ACCATCGACA CAGGCGTGGT TGGCCGATTC GTGGCAGCGC
AGCATTGGCG CTGGCTTGTC AGAATTTCAG TTACCCCAAG AGCTTAGGCT CGACGCCAGC
GAACTAAAGC AGAAACATGA GCAATATCAA ATGCTCATTG CATTAGTGCA ATCCCATGCT
TTGCCCTTGT TCAATCAGTT GATGGCGCAT TCTAATAGCC GACTCTTGCT CTCCGATGCC
GAGGGTTATG TGCTTAGGCA CTGGGGCGTG AGCCGCTACT CCACAAAATT GGCGGACGTG
GCTTTGGATA TCGGGGTGAA TTGGCTCGAA CAGCACAAAG GCACCAATGC GATAGGGACG
GCACTCACCG CCAAGCAAGC AGTATCTGTA GTGGGTGAGC AGCATTTTAT TCGTCAGAAT
CGTTTTATGA GTTGCACCGC CTGCCCGATA TTTTCTCCCC AAGGTGAGAT GCTCGGGGTG
ATAGATATCA CCAGTGAGCA GCAAAGACAC ACTCAGCAGA CGCTGATGTT AGTGTCGAGC
TTGGCGCAGC AGGTCGAGAC CGCGCTCTTG TGTCACTTGC CCGATAGCCG TTATCGAATC
GATTTAGCGG CGCAGCCAAA CCTACTGAAT TCGGGTTGGC AGGGCATAGT GATTGCCGAT
AGTGATGGTC GCATTGTGGG GTGCAATCCC ATGGCGAAAC AATTGCTTAG TCATGCCAAG
GTTGGCGATT CCGTCGAGCA GTACTTAGGC GATAATTGGA GCCGTGCGGG TGGCTTTAAT
CAGCATTTAG ACTTGCATCT ACAGACTCAG CCCTTAAATA TTCCCAGCAT CAAGAGTCGG
GTAGCGACTA GTAATAAATC GCTTAATCAA CTGGGCGTGC GGTTTCGCGA CCCTCAACTT
GAGCGCGCAT GGCAACATGC CAATAAGGTG ATCACCAAGC AAATTCCGCT GTTAGTGCTC
GGTGAAACCG GCGTCGGTAA AGAGCAGTTT GTTAAAAAAC TCCACGCCCA GAGCGCGCGT
CGCACCGAGC ATTTAGTGGC GGTGAACTGC GCTGCATTGC CTGCCGAGTT AGTCGAATCT
GAACTCTTTG GTTATCAGGC GGGCGCGTTT ACTGGGGCAA ATCGTACTGG ATTTATCGGC
AAAATTCGCC AAGCCCACGG CGGCTTCTTG TTTTTAGATG AAATTGGCGA AATGCCGCTG
GCGGCCCAGA GTCGTTTACT TAGGGTGTTA CAGGAGCGCG AAGTGGTACC CGTTGGCAGT
AATCAAAGTT TTAAAGTTGA TATTCAAATC ATTGCCGCGA CCCATATGGA TTTGGAGCAA
CAAGTGGCGC AGGGGCTGTT TCGGCAGGAT TTATTCTATC GATTGAATGG TTTGCAAGTA
CGTTTACCCG CGCTGCGTGA GCGGCAGGAT ATCGAGCGTA TTATCCATAA ATTGCATCGT
AAACATCGCA TTGCGCCGCA GGCGATCTGC CCTGAGTTGT TAGGGCTGCT GATGCAACAC
GACTGGCCCG GCAATTTGCG CGAGCTCGAT AATCTTATGC AAGTGGCTTG CTTGATGGCA
GAAGGTGATG ACACCTTAAC TTGGCAGCAT TTACCCGATT ATCTTGCACA AAAATTAGCG
TGCGAGCCGT TAAAAGTGGA TCCGTTAAAT GCACAGCTGT TAAACACACA GCTGTTAAAT
GAGGAGCAGC CATTAGGTGA AGAGGTTAAA ACCGGTCAAA ACTCTGCATC ACATCCGCTG
GCTGGCAAAG TTGTGAGTGG CAAAGTTACA AGTGGCAACA TTGCGGTGCA GCCAACTGCC
AATGCGGTTC AATCGGATTC TCTCCACGAG GCGATTTATA GCAATGTGCT ACAGGCATAC
CAAGCCTGTG GTGGCAATGT GAGCCAATGC GCCAAGCGTT TGGGGATCAG CCGTAATGCC
TTGTATCGTC GATTAAAACA GATGGGACTT AAGGGTTAA
|
|---|
| Protein sequence | MAVKPHLPST QAWLADSWQR SIGAGLSEFQ LPQELRLDAS ELKQKHEQYQ MLIALVQSHA
LPLFNQLMAH SNSRLLLSDA EGYVLRHWGV SRYSTKLADV ALDIGVNWLE QHKGTNAIGT
ALTAKQAVSV VGEQHFIRQN RFMSCTACPI FSPQGEMLGV IDITSEQQRH TQQTLMLVSS
LAQQVETALL CHLPDSRYRI DLAAQPNLLN SGWQGIVIAD SDGRIVGCNP MAKQLLSHAK
VGDSVEQYLG DNWSRAGGFN QHLDLHLQTQ PLNIPSIKSR VATSNKSLNQ LGVRFRDPQL
ERAWQHANKV ITKQIPLLVL GETGVGKEQF VKKLHAQSAR RTEHLVAVNC AALPAELVES
ELFGYQAGAF TGANRTGFIG KIRQAHGGFL FLDEIGEMPL AAQSRLLRVL QEREVVPVGS
NQSFKVDIQI IAATHMDLEQ QVAQGLFRQD LFYRLNGLQV RLPALRERQD IERIIHKLHR
KHRIAPQAIC PELLGLLMQH DWPGNLRELD NLMQVACLMA EGDDTLTWQH LPDYLAQKLA
CEPLKVDPLN AQLLNTQLLN EEQPLGEEVK TGQNSASHPL AGKVVSGKVT SGNIAVQPTA
NAVQSDSLHE AIYSNVLQAY QACGGNVSQC AKRLGISRNA LYRRLKQMGL KG
|
|---|
| |