| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal223_0199 |
|---|
| Symbol | |
|---|
| ID | 7086801 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS223 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011663 |
|---|
| Strand | - |
|---|
| Start bp | 225961 |
|---|
| End bp | 228081 |
|---|
| Gene Length | 2121 bp |
|---|
| Protein Length | 706 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 643459119 |
|---|
| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
|---|
| Protein accession | YP_002356159 |
|---|
| Protein GI | 217971408 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCAGAT GGCAACACTT ACTTAAGAAA CTCAGTACGG ATGATCCAGT ACTGCAAGAA
AAGCTGTCGC TCTGGCAAGC ACATCCCCAC AAAACTCCCC TAGCCTTAAT TCAAGGCTTC
AGCTTTATTA GCGCCAACCA AGCGACACTC GGTTATTTTG AGACTGAGTA TGACGCCTTT
GTGAATGCGA CGCCCTATGA CTTTTCTCCG AGAATTCAAT CATCCGGCCG CAACAGTGTT
GAATATGCGA GGGAAATGAT CCTTGAAGCC ATTGCAGGAA ATAATGTTGA ATTCAACTGG
CTACACTTGA GTCAACTCGG CAATGAACTG CCAACTCGAG TAAACCTTTA TCGCTGCTAT
CTGCAGCAAC AGCCCGTTGT GCTCGTGGAA TTTCAAGCGC TCAATCGCCG TAATCAAATG
CGCGAAATTA TTACCGATGG CTTTGCCCAT ATTCCTAAAG AGATTTTGTC GACGACGCTC
GAGGAAAGTG CCGAAGCTGT GTATATCACA GACTCAGATG ATCAGATTTT GGCCGTTAAT
AAAGCTATGT GCCGTATTTG CGGTTATAGC GCCGAGCAGC TTATTAGTAA AACCCCTGAA
TTTTTAGAGC TAAGAAGCCA TCATTTAGGA GAAGAAACCG AATGCCAAAT TGCACTAAAA
CAAAGGGGCT TTTGGCAGGG TGAAACGTGG AAAAGACGTT CAGATGGTAG TAATTTCCCT
GCTTGGCAAA GTAGTCGAAA AATCATTACC GAAGATGGCG CTCACTATAA TGTGAATATT
TTCAGTGACA TTAGTACCAA AAAGTTGTTA GAAACTCAGC TGACGACCCG TGCTATGTAC
GATACCTTGA CTGGATTGCC AAACCGGTTC CACCTTAAGC AGATCCTCAA TAGTGCCCTC
GAAAAACTTA AAACCGATCC CTTAGCATTA GGTGCGCTGA TGTTTTTAGA TCTCAATGGG
TTTAAAAATA TCAATGACAG CTTCGGCCAC TCCATGGGCG ATAGAGTATT ACAACTCGTC
GCAGCCAGAC TCGAAGCCGG TTGTATCGAA AAAGCAGACA TAGCCAGGAT GGGTGGAGAT
GAATTTACCT TAGTGCTGCA AGACTGTAGC TGCAAGGATG AAATCCAACT GTTTGCAGAA
CAGATACTCA GCTTATTTGA GAGCCCCTTT GAAATTGAAG GACAAAAGTT TTTCTTAGGC
ACAAGTATCG GCATTGCACT ATTTCCGACC CACAGTGATA AGGCGGGACA ACTGATAAGT
CTTGCAGATA CGGCTATGTA CTGTGCTAAA AAGAGCTTAC CGCACCTCGT ATTTTACGAT
AAGGCTATGA GCCAGGCCGC AGAGTTAAAG CTGCAGTTAA TCAATAGTCT AAGACATGCT
CACAGCTTAA AACAGTTCAC TCTCGCCTAT CAGGCCATAG TGGATTTACA CACAAATCAA
ACGATTGCAG CCGAAGCATT ACTGCGCTGG CAAAAATCAC CTACCGAGTA TTATGACGCT
GCCGACTTTG TACCATTGCT GGAAGAAACA GGGTTAATTG TCAGTATTGG TCAATGGGTA
TTAGAACAAG CTTGTGTGCA AGCGGCACTA TGGCGGGCAC ATAATCAGGC AGACTTTAGA
ATTTCAGTCA ATGTGTCACC ACTGCAATTG GAACACTTAG ACTTTATCGA CCAAGTAATT
AACGCCTTGG ACATGGCTAA TTTACCTGCT GAAGCACTGA TTTTAGAAAT CACCGAATCG
GCACTGTTAC GCCAACCTGA GCAAGCACGA CTCACTCTCA ACCGCATAAA AGCCCTAGGT
GTCAGCATTG CTATCGATGA TTTTGGTACT GGATTATCCT CACTCAGTCG TTTAGGCACT
TTGCCCATAG ACAGTGTAAA AATTGATGCC GAGTTTGCCT TGCGCTTAAA CGAAGTTTCA
GGACAAAAGC TCTGCAATGC CATAGTGCAA CTCGCACAGG CACTCGATAT TCACTTCGTC
GCCGAAGGCA TAGAGACTCA ACAACAAAGG GACATAATGA CAGACATGGG CCAAGGTTTT
GCCCAAGGAT TTCTTTTTGG TTATCCGAGT TCAGTCGATA ACTTCACCCA AACCTTTCTT
GCGGAAAAAC ATATAGCTTA A
|
|---|
| Protein sequence | MIRWQHLLKK LSTDDPVLQE KLSLWQAHPH KTPLALIQGF SFISANQATL GYFETEYDAF
VNATPYDFSP RIQSSGRNSV EYAREMILEA IAGNNVEFNW LHLSQLGNEL PTRVNLYRCY
LQQQPVVLVE FQALNRRNQM REIITDGFAH IPKEILSTTL EESAEAVYIT DSDDQILAVN
KAMCRICGYS AEQLISKTPE FLELRSHHLG EETECQIALK QRGFWQGETW KRRSDGSNFP
AWQSSRKIIT EDGAHYNVNI FSDISTKKLL ETQLTTRAMY DTLTGLPNRF HLKQILNSAL
EKLKTDPLAL GALMFLDLNG FKNINDSFGH SMGDRVLQLV AARLEAGCIE KADIARMGGD
EFTLVLQDCS CKDEIQLFAE QILSLFESPF EIEGQKFFLG TSIGIALFPT HSDKAGQLIS
LADTAMYCAK KSLPHLVFYD KAMSQAAELK LQLINSLRHA HSLKQFTLAY QAIVDLHTNQ
TIAAEALLRW QKSPTEYYDA ADFVPLLEET GLIVSIGQWV LEQACVQAAL WRAHNQADFR
ISVNVSPLQL EHLDFIDQVI NALDMANLPA EALILEITES ALLRQPEQAR LTLNRIKALG
VSIAIDDFGT GLSSLSRLGT LPIDSVKIDA EFALRLNEVS GQKLCNAIVQ LAQALDIHFV
AEGIETQQQR DIMTDMGQGF AQGFLFGYPS SVDNFTQTFL AEKHIA
|
|---|
| |