| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal223_0003 |
|---|
| Symbol | recF |
|---|
| ID | 7089215 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS223 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011663 |
|---|
| Strand | + |
|---|
| Start bp | 2787 |
|---|
| End bp | 3869 |
|---|
| Gene Length | 1083 bp |
|---|
| Protein Length | 360 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 643458927 |
|---|
| Product | recombination protein F |
|---|
| Protein accession | YP_002355970 |
|---|
| Protein GI | 217971219 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1195] Recombinational DNA repair ATPase (RecF pathway) |
|---|
| TIGRFAM ID | [TIGR00611] recF protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.0851424 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 2 |
|---|
| Fosmid unclonability p-value | 0.00000000117147 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAGTCTGA CCCGTCTCAA TATCGAAGCG TTTCGCAACA TTCAGTCCGC ACAGTTAATC
CCTGCACCTG GGATTAACTT GATTTATGGC CAAAATGGCA GCGGCAAAAC CAGTATTCTT
GAGGCTATTT ATTTTCTCGG TATGGGGCGA TCGTTTCGCA GCCATTTATC CCAACGAGTG
ATTAATAACG ACGACGATAA GTTAACGCTC TTTGCAACCT TAAATTTAGC GCGCGGTGAC
AGTAAAATCG GTTTGCGCCG ATTTCGTAGT GGTGAGACTG AAGTGAGAAT CGACGGCGAA
AAAGTCAAAC GTCTGTCGAC ATTAGCCGAA ACGTTACCTA TTCAAGTGAT CACGCCTGAA
AGCTTTTCTT TACTGTTTGA AGGCCCAAAA TCCCGCCGAC AATTTATCGA TTGGGGCGCA
TTTCATGCTG ACCCACAGTT TTATGGTGCT TGGACGAATG TTCGCCGCGT TCTTAAACAA
AGAAATCAAT TACTTAGAAA TGGCTCGTCC TATAGTAATA TTCAATTTTG GGACCAAGAG
TTTGTGCGTT ATGCCGAGCA GGTTACTGAA ATACGAAACC ATTATGTAGA CTCGTTAAAT
GAGCTACTTA AGGGTATAAT CGGGGAGTTT TTACCGAGTG TAGATGTGAA GGTTTCATTT
ACGCGCGGCT GGGATAGTAA AACGGATTTT GCAGAACTAC TCGAAAACCA ATATTCCAGA
GATTTGGCCA CAGGTCATAC CGTCAGCGGT CCCCATAAAG CTGACCTTAG ACTTCGTGTA
GGCACTTTGC CGGCGCAGGA TGCCCTGTCC CGTGGTCAAT TAAAATTATT AGTCTGTGCA
CTGCGTATTG CACAGGGAAA GTTGCTCAAA CAACAAATAG ATAAACACAG TATTTATCTT
GTGGATGATC TTCCGTCCGA GTTGGATGCA CAGCATAGGC AGCTATTGCT TAAGCAGTTA
ACGGATACCG GAGCACAAGT TTTTGTGACC GCCATCGATC CTGCTGCAAT AGTCGATTCG
TTACACACGC CTCCCAGTAG GATGTTTCAT GTGGAACAGG GACGTGTAAC GGTAATTGAA
TAA
|
|---|
| Protein sequence | MSLTRLNIEA FRNIQSAQLI PAPGINLIYG QNGSGKTSIL EAIYFLGMGR SFRSHLSQRV
INNDDDKLTL FATLNLARGD SKIGLRRFRS GETEVRIDGE KVKRLSTLAE TLPIQVITPE
SFSLLFEGPK SRRQFIDWGA FHADPQFYGA WTNVRRVLKQ RNQLLRNGSS YSNIQFWDQE
FVRYAEQVTE IRNHYVDSLN ELLKGIIGEF LPSVDVKVSF TRGWDSKTDF AELLENQYSR
DLATGHTVSG PHKADLRLRV GTLPAQDALS RGQLKLLVCA LRIAQGKLLK QQIDKHSIYL
VDDLPSELDA QHRQLLLKQL TDTGAQVFVT AIDPAAIVDS LHTPPSRMFH VEQGRVTVIE
|
|---|
| |