| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmz1t_4026 |
|---|
| Symbol | |
|---|
| ID | 7873672 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thauera sp. MZ1T |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011662 |
|---|
| Strand | + |
|---|
| Start bp | 4423940 |
|---|
| End bp | 4425163 |
|---|
| Gene Length | 1224 bp |
|---|
| Protein Length | 407 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 643700963 |
|---|
| Product | coproporphyrinogen III oxidase |
|---|
| Protein accession | YP_002890986 |
|---|
| Protein GI | 237654672 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0635] Coproporphyrinogen III oxidase and related Fe-S oxidoreductases |
|---|
| TIGRFAM ID | [TIGR00539] putative oxygen-independent coproporphyrinogen III oxidase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.799175 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGACCACCC GCCGCATCAT CCCGCTGACG CCGGCCACCG GGGCCGCGCG CGCCCTGCCC
CTGCCCGAAC GCCCGCAGCT CGAGGCCCCG CCGCCGCTCT CCCTGTACGT GCATTTCCCG
TGGTGCGTGA AGAAGTGCCC CTACTGCGAC TTCAACTCCC ACGCCCCACG CGAGGGCGGC
ATCCCCGAGC AGGCCTGGCT AGGCGCGGTG CTCGCCGACC TGCAGCACGC CCTGCCCCAG
GTCTGGGGCC GGCGGGTGCA TAGCGTCTTC ATCGGCGGCG GCACGCCCAG CCTGATGTCC
GCGACCACGC TCGACGGCCT GCTCACCGGC ATCCGCATGC TGCTGCCGCT CGACCCGCTC
GCCGAGATCA CGCTCGAGGC CAACCCGGGC ACGGTCGAGG CCGGACGCTT CCGCGACTAC
CGCGCCGCCG GCGTCAATCG CCTGTCGCTC GGCATCCAGA GCTTCGACGA CGCCATGCTG
GCGAAGATCG GCCGCATCCA CGGCGGCGAG GAGGCGCGGC GCGCGATCGA GGCCGCGCGC
ACCCACTTCG AGCGCGTCAA CCTCGATCTC ATGTATGCCC TGCCCGGCCA GACCCTCGAC
ATGGCGCTCG CCGACCTGGA GACCGCGATC GGCTTCGGCG TGCAGCACCT GTCGTGCTAC
CACCTCACCC TCGAACCCAA CACCCCCTTC GCCCACGACC CGCCGCCGCT GCCCGACGAC
GACACCGCCG CCGACATGCA GGAGGCCATC GAGGCCCGCC TCGCCGCCGC CGGCTTCACG
CACTACGAGA CCTCCGCCTT CGCCCGCCCG CACGAGCAGA GCCGGCACAA CCTCAACTAC
TGGACCTTCG GCGACTATCT CGGCCTCGGC CCGGGCGCGC ACGGCAAGCT CTCCAGCCAC
GAGGGCATCC GCCGCGAGAT GCGCCACAAG CACCCGGGGC GTTACCTCGA AGGCGCGGCG
CGCAGCGACT TCATCCAGGA AGCGCGCGAG GTGTCGGTGG CCGAGTTGCC CTTCGAGTTC
ATGATGAACG CGCTGCGGCT CACCGAGGGC GTTCCGGCGA AGCTGTTCGC GGCGCGCACG
GGGGTGCCGA TCGAGGCCAT CACCGACGAA CTGGCGCGGG CGCGCGAACG CGGGCTGCTG
GACACTGCGG ACGGAAAACT GCGGCCGACG CTGCAGGGTC GGCGGTTTCT GAACGAGTTG
CTGCAGGGGT TTCTAAAGGA CTGA
|
|---|
| Protein sequence | MTTRRIIPLT PATGAARALP LPERPQLEAP PPLSLYVHFP WCVKKCPYCD FNSHAPREGG
IPEQAWLGAV LADLQHALPQ VWGRRVHSVF IGGGTPSLMS ATTLDGLLTG IRMLLPLDPL
AEITLEANPG TVEAGRFRDY RAAGVNRLSL GIQSFDDAML AKIGRIHGGE EARRAIEAAR
THFERVNLDL MYALPGQTLD MALADLETAI GFGVQHLSCY HLTLEPNTPF AHDPPPLPDD
DTAADMQEAI EARLAAAGFT HYETSAFARP HEQSRHNLNY WTFGDYLGLG PGAHGKLSSH
EGIRREMRHK HPGRYLEGAA RSDFIQEARE VSVAELPFEF MMNALRLTEG VPAKLFAART
GVPIEAITDE LARARERGLL DTADGKLRPT LQGRRFLNEL LQGFLKD
|
|---|
| |