| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmz1t_3985 |
|---|
| Symbol | |
|---|
| ID | 7873631 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thauera sp. MZ1T |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011662 |
|---|
| Strand | + |
|---|
| Start bp | 4383286 |
|---|
| End bp | 4383966 |
|---|
| Gene Length | 681 bp |
|---|
| Protein Length | 226 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 643700922 |
|---|
| Product | two component heavy metal response transcriptional regulator, winged helix family |
|---|
| Protein accession | YP_002890945 |
|---|
| Protein GI | 237654631 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
|---|
| TIGRFAM ID | [TIGR01387] heavy metal response regulator |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATTC TGATCGTCGA AGACGAAGTG AAGACCGGCG ACTACCTCCG CCAGGGGCTC
ACCGAAGCCG GGTTCGTCGT CGACCTTGCA AGAGATGGCC TCGATGGGCT CCACCTCGCA
CTCAATGGCG ATTACGACCT CATCGTGCTG GATGTGATGC TTCCGTCGCT GGACGGCTGG
GGCATCCTGC AAACACTGCG GCGCGGCGGC CGTGAGACGC CTGTGCTGTT CCTCACTGCC
CGCGACCAAA TTGAGGATCG CGTTCGTGGC CTTGAGCTCG GCGCCGATGA TTACCTGGTC
AAGCCCTTCG CGTTTTCCGA GTTGCTCGCG CGCGTTCGCA CGCTGCTGCG CAGGGGAAGA
AACCACGAAC CGGAGACCCT GCGCTCAGCG AACCTGGAGC TCGATTTGCT TCGCCGCCGG
GTGAACCGAT GCGGGCAGCG CATCGATCTG ACCGCCAAGG AGTTTGCCTT GCTGGAACTG
CTGCTGCGAC GCAAGGGTGA AGTATTGCCC CGCTCACTCA TCGCTTCGCA GGTGTGGGAC
ATGAACTTCG ACAGCGACAC GAACGTGATC GAAGTTGCCG TGCGCAGGTT GCGCGTAAAG
GTCGACGACC CCTTTGAGCC GAAGCTGATC CACACCGTGC GGGGTATGGG CTACGTGCTT
GAGGCGATGG AGCCGATCTG A
|
|---|
| Protein sequence | MKILIVEDEV KTGDYLRQGL TEAGFVVDLA RDGLDGLHLA LNGDYDLIVL DVMLPSLDGW
GILQTLRRGG RETPVLFLTA RDQIEDRVRG LELGADDYLV KPFAFSELLA RVRTLLRRGR
NHEPETLRSA NLELDLLRRR VNRCGQRIDL TAKEFALLEL LLRRKGEVLP RSLIASQVWD
MNFDSDTNVI EVAVRRLRVK VDDPFEPKLI HTVRGMGYVL EAMEPI
|
|---|
| |