Gene Tmz1t_3959 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTmz1t_3959 
Symbol 
ID7873605 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThauera sp. MZ1T 
KingdomBacteria 
Replicon accessionNC_011662 
Strand
Start bp4355906 
End bp4358473 
Gene Length2568 bp 
Protein Length855 aa 
Translation table11 
GC content71% 
IMG OID643700896 
Productdiguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 
Protein accessionYP_002890919 
Protein GI237654605 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAACCGTC CTGAATCCGA CCGCCTCCTG AGCGAGGAGG CCTTCTCCAT GCCCGGCAAC 
GACGAGACCC GCGTCGGCGA GATCATCGGC CGCAACCTGC TCGAGTGCGC CCCGGACGAG
CCCCTGCACG AGGCCGCGCG GCGCATGAGC GAGCGCCGGG TGAGCTCGAT CCTGGTGGTC
GAGGACGACC GTGTGGTGGG CATCTGGACC GAGCGCGACG CATTGCGGGT GGATTTCGAC
GACCCCACGA CCTTCGCCCT GCCGGTACGC GCCGTGATGA GCTCGCCGGT GCGCGTGGTG
TCGACGGCGA CGCCGCTGCA CGAGCTGACC GTGCGCTTCC GCGAGGAGCA CGTGCGCCAC
TACGTGGTCG AGGACGAGAC CGGCCGGCGC GTGGGCATCG TGTCGCAGAC CGACGTGGTG
CTGAACCAGG GCATCAAGCA CTACCTCAAG CTGCGTCGGG TGGATGCGCT GGTCAAGGGC
GGCCTGCACG CGCTGCCCGC GGCGGCGGGG CTGGGCGAGG CGACGCGGCG CATGCGCGAG
GGCGGGGTGG ACGCGGTCGT GGTGGATTAC GGCGCGGCGG ACGCCTCCGC GCCCGCGGGG
CGCTACGGCA TCCTCACCGA GCGCGACGTC ACCCGGCTGG TGGCGCAGCG CACGGCCGAC
CGCGCGCTCG GCGAGCTCGC CAGCCGGCCG CTCGTCACCT GCCGCGCCGA CGACAGCCTG
TACCGCGTGC GCATGCTGCT CGCCGAGCGC CACATCCGCC ACATCGGCGT GCTCGACGGC
GAAGGCGAAC TGGTCGACCT GGTCAGCTTC AAGGACATCC TCAGCGGCAT GGAGCTGGCG
TACGTGCATG AGCTGCACGA CGCCCTGCGC GCGCGCGACC TCGCGCTGAG CGCCTCGCAG
CGCGACCTCT ACCTGGCCGA GAAGGTGATC GAGAGCTCGC TCGAAGGGGT GATGGTCACC
GACGCGCACG CGCGCATCCT CTCGGTGAAC CCCGCCTTCA CGCGCATGAC CGGATATGCG
CCGGAAGAGG TCGTCGGGCT CAATCCCTCG GTACTCAACT CCGGCCGCCA GAGCCCCGCC
TTCTACGCCC GCATGTGGGA CGGCCTGCTG GGCGACGGCC AGTGGCAAGG CGAGGTGTGG
AACCGGCGCA AGACCGGCGA GGTGTATCCG CAGCTGCTGC ACATCACCGC GATCCGCGAC
CGCGAGGGCG TGCTCACCCA TTACGCGGCG CTGTTCACCG ACATCAGCCG GCTCAAGGAG
ACCGAGGCGC GCATCCGCGA CCTCGCCTAT TACGACCCGC TCACCGGCCT GCCCAACCGC
CGCCTGCTCG ACGACCGCCT GCAGGTCGAG CTCGCCCACG CCGCACGCCT GCGCTGCCGG
CTGGCGGTGA TGTTCGTCGA CCTCGACCGC TTCAAGCGCA TCAACGACAG CCTCGGCCAC
GCGGTGGGCG ACAAGCTGCT GGTCGAGATC GCCGCCCGCC TGCGCGCCAG CCTGCGCGAC
GACGACACCG TCGCCCGCAT GGGTGGCGAC GAGTTCCTCG TCGTGCTCAA CAACCTGTCC
GGCCCCGACG AGGCGGCGAC GATGGCGCGC AGGATGGTCG CGGAGCTGCG CCGCCCGGTG
AATGTCGAGG GCCGCGAGCT GGTGGTGACG ACCAGCGTGG GCGTCGCCGT GTACCCGGAC
GACTCGCGCG ACGCCGACAC CCTGGTCAAG CACGCGGACG TGGCGATGTA CCGCGCCAAG
GACGAGGGGC GCAACAGCTT CCAGCTCTTC GAGCCGGCGA TGAACGCGCG CTCGCTCGAG
CGCCTCGCGC TCGAGACCGC GCTGCACCGA GCCCTGCCGC GCGACGAGCT GCAGCTCTAC
TTCCAGCCGG TGATGAAGGC CGAGGGAGGC GAACTGGTCG CGGTCGAGGC CTTGCTGCGC
TGGCGCCACC CCGACCTCGG CCTGGTGTCG CCGGCCGACT TCATCCCGCT CGCCGAAGAC
ACCGGCCTGA TCGTGCCGAT CGGCGAATGG GTGCTGCGCA GCGCCTGCGA GCATCACCGG
CGCTGGTGCG AGGCGGGCGG CGCACCGCTG CACATGATGG TGAACATCTC GGCGCGCCAG
TTCCGCGAGG AAGGCTTCGC CGCGATGGTC GGCAGCGTGC TCGCCGAGAC CGGCATGACG
CCGGGCGACC TGACGCTGGA GCTCACCGAA AGCATGCTGA TGGACGACAC CGACCGCGCG
CTCGCGCGCC TCGACCATCT GCGCGCGCTC GGCGTGTGCC TGGCGATCGA CGATTTCGGC
ACGGGGTATT CGTCGCTCGC CTATCTCAAG CGCTTCCCGA TCGACGAACT CAAGATCGAC
CGCCTGTTCG TGCGCGGCAT CGACCGCAAT ACGCGCGACG CGGCGCTGGT TTCGGCGATC
GTCTCGCTCG GCCACAGCCT GGGCCTGCGC GTGGTCGCCG AGGGCGTCGA GACCGCCGCC
CACCTCGACG TGCTGCGCCG CCAGGGCTGC GACCTGGCGC AAGGCTTCCA CTTCAGCCCG
CCCTTGCCCT GGGAAGAGTT CGTCAAAGCC TACCCGCCGG CGGGCTGA
 
Protein sequence
MNRPESDRLL SEEAFSMPGN DETRVGEIIG RNLLECAPDE PLHEAARRMS ERRVSSILVV 
EDDRVVGIWT ERDALRVDFD DPTTFALPVR AVMSSPVRVV STATPLHELT VRFREEHVRH
YVVEDETGRR VGIVSQTDVV LNQGIKHYLK LRRVDALVKG GLHALPAAAG LGEATRRMRE
GGVDAVVVDY GAADASAPAG RYGILTERDV TRLVAQRTAD RALGELASRP LVTCRADDSL
YRVRMLLAER HIRHIGVLDG EGELVDLVSF KDILSGMELA YVHELHDALR ARDLALSASQ
RDLYLAEKVI ESSLEGVMVT DAHARILSVN PAFTRMTGYA PEEVVGLNPS VLNSGRQSPA
FYARMWDGLL GDGQWQGEVW NRRKTGEVYP QLLHITAIRD REGVLTHYAA LFTDISRLKE
TEARIRDLAY YDPLTGLPNR RLLDDRLQVE LAHAARLRCR LAVMFVDLDR FKRINDSLGH
AVGDKLLVEI AARLRASLRD DDTVARMGGD EFLVVLNNLS GPDEAATMAR RMVAELRRPV
NVEGRELVVT TSVGVAVYPD DSRDADTLVK HADVAMYRAK DEGRNSFQLF EPAMNARSLE
RLALETALHR ALPRDELQLY FQPVMKAEGG ELVAVEALLR WRHPDLGLVS PADFIPLAED
TGLIVPIGEW VLRSACEHHR RWCEAGGAPL HMMVNISARQ FREEGFAAMV GSVLAETGMT
PGDLTLELTE SMLMDDTDRA LARLDHLRAL GVCLAIDDFG TGYSSLAYLK RFPIDELKID
RLFVRGIDRN TRDAALVSAI VSLGHSLGLR VVAEGVETAA HLDVLRRQGC DLAQGFHFSP
PLPWEEFVKA YPPAG