| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmz1t_3959 |
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| Symbol | |
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| ID | 7873605 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thauera sp. MZ1T |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011662 |
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| Strand | + |
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| Start bp | 4355906 |
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| End bp | 4358473 |
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| Gene Length | 2568 bp |
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| Protein Length | 855 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 643700896 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_002890919 |
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| Protein GI | 237654605 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACCGTC CTGAATCCGA CCGCCTCCTG AGCGAGGAGG CCTTCTCCAT GCCCGGCAAC
GACGAGACCC GCGTCGGCGA GATCATCGGC CGCAACCTGC TCGAGTGCGC CCCGGACGAG
CCCCTGCACG AGGCCGCGCG GCGCATGAGC GAGCGCCGGG TGAGCTCGAT CCTGGTGGTC
GAGGACGACC GTGTGGTGGG CATCTGGACC GAGCGCGACG CATTGCGGGT GGATTTCGAC
GACCCCACGA CCTTCGCCCT GCCGGTACGC GCCGTGATGA GCTCGCCGGT GCGCGTGGTG
TCGACGGCGA CGCCGCTGCA CGAGCTGACC GTGCGCTTCC GCGAGGAGCA CGTGCGCCAC
TACGTGGTCG AGGACGAGAC CGGCCGGCGC GTGGGCATCG TGTCGCAGAC CGACGTGGTG
CTGAACCAGG GCATCAAGCA CTACCTCAAG CTGCGTCGGG TGGATGCGCT GGTCAAGGGC
GGCCTGCACG CGCTGCCCGC GGCGGCGGGG CTGGGCGAGG CGACGCGGCG CATGCGCGAG
GGCGGGGTGG ACGCGGTCGT GGTGGATTAC GGCGCGGCGG ACGCCTCCGC GCCCGCGGGG
CGCTACGGCA TCCTCACCGA GCGCGACGTC ACCCGGCTGG TGGCGCAGCG CACGGCCGAC
CGCGCGCTCG GCGAGCTCGC CAGCCGGCCG CTCGTCACCT GCCGCGCCGA CGACAGCCTG
TACCGCGTGC GCATGCTGCT CGCCGAGCGC CACATCCGCC ACATCGGCGT GCTCGACGGC
GAAGGCGAAC TGGTCGACCT GGTCAGCTTC AAGGACATCC TCAGCGGCAT GGAGCTGGCG
TACGTGCATG AGCTGCACGA CGCCCTGCGC GCGCGCGACC TCGCGCTGAG CGCCTCGCAG
CGCGACCTCT ACCTGGCCGA GAAGGTGATC GAGAGCTCGC TCGAAGGGGT GATGGTCACC
GACGCGCACG CGCGCATCCT CTCGGTGAAC CCCGCCTTCA CGCGCATGAC CGGATATGCG
CCGGAAGAGG TCGTCGGGCT CAATCCCTCG GTACTCAACT CCGGCCGCCA GAGCCCCGCC
TTCTACGCCC GCATGTGGGA CGGCCTGCTG GGCGACGGCC AGTGGCAAGG CGAGGTGTGG
AACCGGCGCA AGACCGGCGA GGTGTATCCG CAGCTGCTGC ACATCACCGC GATCCGCGAC
CGCGAGGGCG TGCTCACCCA TTACGCGGCG CTGTTCACCG ACATCAGCCG GCTCAAGGAG
ACCGAGGCGC GCATCCGCGA CCTCGCCTAT TACGACCCGC TCACCGGCCT GCCCAACCGC
CGCCTGCTCG ACGACCGCCT GCAGGTCGAG CTCGCCCACG CCGCACGCCT GCGCTGCCGG
CTGGCGGTGA TGTTCGTCGA CCTCGACCGC TTCAAGCGCA TCAACGACAG CCTCGGCCAC
GCGGTGGGCG ACAAGCTGCT GGTCGAGATC GCCGCCCGCC TGCGCGCCAG CCTGCGCGAC
GACGACACCG TCGCCCGCAT GGGTGGCGAC GAGTTCCTCG TCGTGCTCAA CAACCTGTCC
GGCCCCGACG AGGCGGCGAC GATGGCGCGC AGGATGGTCG CGGAGCTGCG CCGCCCGGTG
AATGTCGAGG GCCGCGAGCT GGTGGTGACG ACCAGCGTGG GCGTCGCCGT GTACCCGGAC
GACTCGCGCG ACGCCGACAC CCTGGTCAAG CACGCGGACG TGGCGATGTA CCGCGCCAAG
GACGAGGGGC GCAACAGCTT CCAGCTCTTC GAGCCGGCGA TGAACGCGCG CTCGCTCGAG
CGCCTCGCGC TCGAGACCGC GCTGCACCGA GCCCTGCCGC GCGACGAGCT GCAGCTCTAC
TTCCAGCCGG TGATGAAGGC CGAGGGAGGC GAACTGGTCG CGGTCGAGGC CTTGCTGCGC
TGGCGCCACC CCGACCTCGG CCTGGTGTCG CCGGCCGACT TCATCCCGCT CGCCGAAGAC
ACCGGCCTGA TCGTGCCGAT CGGCGAATGG GTGCTGCGCA GCGCCTGCGA GCATCACCGG
CGCTGGTGCG AGGCGGGCGG CGCACCGCTG CACATGATGG TGAACATCTC GGCGCGCCAG
TTCCGCGAGG AAGGCTTCGC CGCGATGGTC GGCAGCGTGC TCGCCGAGAC CGGCATGACG
CCGGGCGACC TGACGCTGGA GCTCACCGAA AGCATGCTGA TGGACGACAC CGACCGCGCG
CTCGCGCGCC TCGACCATCT GCGCGCGCTC GGCGTGTGCC TGGCGATCGA CGATTTCGGC
ACGGGGTATT CGTCGCTCGC CTATCTCAAG CGCTTCCCGA TCGACGAACT CAAGATCGAC
CGCCTGTTCG TGCGCGGCAT CGACCGCAAT ACGCGCGACG CGGCGCTGGT TTCGGCGATC
GTCTCGCTCG GCCACAGCCT GGGCCTGCGC GTGGTCGCCG AGGGCGTCGA GACCGCCGCC
CACCTCGACG TGCTGCGCCG CCAGGGCTGC GACCTGGCGC AAGGCTTCCA CTTCAGCCCG
CCCTTGCCCT GGGAAGAGTT CGTCAAAGCC TACCCGCCGG CGGGCTGA
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| Protein sequence | MNRPESDRLL SEEAFSMPGN DETRVGEIIG RNLLECAPDE PLHEAARRMS ERRVSSILVV
EDDRVVGIWT ERDALRVDFD DPTTFALPVR AVMSSPVRVV STATPLHELT VRFREEHVRH
YVVEDETGRR VGIVSQTDVV LNQGIKHYLK LRRVDALVKG GLHALPAAAG LGEATRRMRE
GGVDAVVVDY GAADASAPAG RYGILTERDV TRLVAQRTAD RALGELASRP LVTCRADDSL
YRVRMLLAER HIRHIGVLDG EGELVDLVSF KDILSGMELA YVHELHDALR ARDLALSASQ
RDLYLAEKVI ESSLEGVMVT DAHARILSVN PAFTRMTGYA PEEVVGLNPS VLNSGRQSPA
FYARMWDGLL GDGQWQGEVW NRRKTGEVYP QLLHITAIRD REGVLTHYAA LFTDISRLKE
TEARIRDLAY YDPLTGLPNR RLLDDRLQVE LAHAARLRCR LAVMFVDLDR FKRINDSLGH
AVGDKLLVEI AARLRASLRD DDTVARMGGD EFLVVLNNLS GPDEAATMAR RMVAELRRPV
NVEGRELVVT TSVGVAVYPD DSRDADTLVK HADVAMYRAK DEGRNSFQLF EPAMNARSLE
RLALETALHR ALPRDELQLY FQPVMKAEGG ELVAVEALLR WRHPDLGLVS PADFIPLAED
TGLIVPIGEW VLRSACEHHR RWCEAGGAPL HMMVNISARQ FREEGFAAMV GSVLAETGMT
PGDLTLELTE SMLMDDTDRA LARLDHLRAL GVCLAIDDFG TGYSSLAYLK RFPIDELKID
RLFVRGIDRN TRDAALVSAI VSLGHSLGLR VVAEGVETAA HLDVLRRQGC DLAQGFHFSP
PLPWEEFVKA YPPAG
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