| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmz1t_3925 |
|---|
| Symbol | |
|---|
| ID | 7873571 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thauera sp. MZ1T |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011662 |
|---|
| Strand | + |
|---|
| Start bp | 4320811 |
|---|
| End bp | 4321992 |
|---|
| Gene Length | 1182 bp |
|---|
| Protein Length | 393 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 643700862 |
|---|
| Product | hydrogenase expression/formation protein HypD |
|---|
| Protein accession | YP_002890885 |
|---|
| Protein GI | 237654571 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0409] Hydrogenase maturation factor |
|---|
| TIGRFAM ID | [TIGR00075] hydrogenase expression/formation protein HypD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.547709 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAATACG TGGACGAGTT CCGCGACGGC GCCCTCGCCG CCGGGCTGGC GCGCGCGCTC
GCGCGCGAGG TCGACCCCGG CCGCGACTAC GCCTTCATGG AGTTCTGCGG CGGCCACACC
CACGCCATCT CGCGCTACGG CGTGGCCGAC CTGCTGCCAC CCAACGTGCG CATGATCCAC
GGCCCCGGCT GTCCGGTGTG CGTGCTGCCG ATCGGTCGCG TGGACATGGC GATCGGCCTC
GCGCTGGCGC GCCCCGAGGT GATCCTGTGC AGCTACGGCG ACTGCCTGCG CGTGCCCGCC
TCCGACGGCC TTTCGCTGCT GAAGGCCAAG GCACGCGGCG CCGACGTGCG CATGGTGTAC
TCCGCCGCCG ACGCGCTCGC GCTCGCCGTG CGCGAACCCG CACGCGAGGT GGTCTTCTTC
GCGATCGGCT TCGAGACCAC CACGCCCCCC ACCGCGCTCG TGCTGCGCGA GGCCGCCACG
CGCAGGCTCG CCAACTTCAG CGTGATCTGC AACCACGTGC TGACGCCGCC GGCGATCACC
GCGATCCTCG ACTCGCCCGC AGCCAGCCGG CTCGGGGCGC TGCACCTGGA CGGGTTCATC
GGCCCCGCCC ACGTGTCCAC CCTGATCGGC AGCCGCCCCT ACGAAGCCTT CGCCGCCCGC
TACCGCAAGC CCGTGGTCAT CGCCGGCTTC GAACCGCTCG ATGTGATGCA GGCGATCCGC
ATGCTGGTGC GCCAGGTCGA CACGGGCCGT GCCGAGGTCG AAAACGAGTT CACCCGCGCG
GTGGTGCGCG ACGGCAACCC GAAAGCGCAG GCGATCGTGT CGGAGGTGCT GGCGTTGCGC
GACGAGTTCG AGTGGCGCGG CCTCGGTGTG CTGGCGCGCT CCGCGCTGCG CATCCGCCCC
GCCTTCGCGC CCTGGGACGC CGAGGCGAAG TTCGGTCTCG ACTACCGCCC CGTGCCCGAC
CACCGCGCCT GCGAATGCGG CGCCATCCTG CGCGGCGTGA AGAAGCCGAC CGACTGCAAG
CTCTTCGGCA CCGTGTGCAC CCCGGAAACG CCGATGGGCT CGTGCATGGT GTCCTCCGAG
GGCGCCTGCG CCGCGCACTA CAACTACGGG CGCTTCCGCG ACGTTCCGGT ACATGTCGTC
GGCACCTCCG CACCCCCGAA TCCGGACCAG GAAACCGCAT GA
|
|---|
| Protein sequence | MKYVDEFRDG ALAAGLARAL AREVDPGRDY AFMEFCGGHT HAISRYGVAD LLPPNVRMIH
GPGCPVCVLP IGRVDMAIGL ALARPEVILC SYGDCLRVPA SDGLSLLKAK ARGADVRMVY
SAADALALAV REPAREVVFF AIGFETTTPP TALVLREAAT RRLANFSVIC NHVLTPPAIT
AILDSPAASR LGALHLDGFI GPAHVSTLIG SRPYEAFAAR YRKPVVIAGF EPLDVMQAIR
MLVRQVDTGR AEVENEFTRA VVRDGNPKAQ AIVSEVLALR DEFEWRGLGV LARSALRIRP
AFAPWDAEAK FGLDYRPVPD HRACECGAIL RGVKKPTDCK LFGTVCTPET PMGSCMVSSE
GACAAHYNYG RFRDVPVHVV GTSAPPNPDQ ETA
|
|---|
| |