| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmz1t_3830 |
|---|
| Symbol | |
|---|
| ID | 7874072 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thauera sp. MZ1T |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011662 |
|---|
| Strand | - |
|---|
| Start bp | 4223681 |
|---|
| End bp | 4224853 |
|---|
| Gene Length | 1173 bp |
|---|
| Protein Length | 390 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 643700772 |
|---|
| Product | Extracellular ligand-binding receptor |
|---|
| Protein accession | YP_002890796 |
|---|
| Protein GI | 237654482 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTGCAGA TGAAGAAGCT GTCCGTCGCG TTCGCCCTGT GCGGCGCTGC CGCCCTCAAC
GCCACCGCCC ACGCCGCCGA CATCAAGGTC GGTATCGCGC TCGACCTCTC CGGTCCCTTC
TCGGCGCTCG GTGCCGAGGC GCGCGACGGT TTCGAGCTGG CGATCGAGAA GCTCGGCGGC
AAGCTCGGCG GCCAGCCGGC GGAGTTCATC CGCAGCGACT TCGGCGGCAA CCCGGAGCAG
GCCAACCAGC TCGTCGCGCG CTTCCTGCAA CGCGACGGCA TCCACTTCTT CACCGGCCCG
ATCGGCTCCA ACGCCGCGCT CGCCGTCGGC CCGGCGCTGT TCGCCGCCAA GGTGCCCTAC
CTGTCGGCCA ACCCCGGTCC GAGCGCCTAC GCCGGCGAGA AGTGCAGCCC CTGGTTCTTC
GCCCAGTACC AGAACGACAC CTACGACGAG GCCGCCGGCA AGGTCGCCAA CGAGAAGGGC
TACAAGAACG TCCTGCTGAT CGCGCCCAAC TACCCGGCGG GCAAGGATCA TCTGAATGGC
TTCAAGCGCC TGTACAAGGG CGCGGTGAAG GACGAGATCT ACACCAAGCT CGGCCAGATC
GACTACGCCG CCGAGATCGC GCAGATCCGC GCCGCCAAGC CGGACGCGGT GTTCTTCTTC
CTGCCCGGCG CGATGGGGAT CAACTTCGTC AAGCAGTTCG TCGGTGGCGG CCTCGAGGAC
ATCCCGCTGA TCGCCCCCGG TTTCTCGGCC GACGAGGACG TGATCCAGGC GGTGGGCGAG
CCGATGCTCG GCGTGCTCAA CACCGCGCAC TGGACGCACG ACCTGCAGAA CCCCGCCAAC
GCCGCGTTCG TCTCCGCCTT CCGCCAGAAG TACGCCGGGC GCTACCCCTC GGTATATGCG
GCGATGGCCT ACGACACCGT GATGGCGATG GACGCCGCGG TGCGCGACGT CGGCGGCAGG
ATCGACGACC GCGAGGCGGT GCTGAAGGCG CTCAAGAATC CCAGCTTCAA GTCCCTGCGC
GGCGAATTCC AGTACGGCGC CAACAACTTC CCGGTGCAGA ACTACTATCT GCGCGAGGTC
GGCAAGGACG CCGAGGGCCG CATCACCAAC AAGCTGGTCG GCACCACGCT CGAGAAGCAC
CAGGACGCCT ACGTGGGCGC GTGCAGGATG TGA
|
|---|
| Protein sequence | MLQMKKLSVA FALCGAAALN ATAHAADIKV GIALDLSGPF SALGAEARDG FELAIEKLGG
KLGGQPAEFI RSDFGGNPEQ ANQLVARFLQ RDGIHFFTGP IGSNAALAVG PALFAAKVPY
LSANPGPSAY AGEKCSPWFF AQYQNDTYDE AAGKVANEKG YKNVLLIAPN YPAGKDHLNG
FKRLYKGAVK DEIYTKLGQI DYAAEIAQIR AAKPDAVFFF LPGAMGINFV KQFVGGGLED
IPLIAPGFSA DEDVIQAVGE PMLGVLNTAH WTHDLQNPAN AAFVSAFRQK YAGRYPSVYA
AMAYDTVMAM DAAVRDVGGR IDDREAVLKA LKNPSFKSLR GEFQYGANNF PVQNYYLREV
GKDAEGRITN KLVGTTLEKH QDAYVGACRM
|
|---|
| |