| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmz1t_3812 |
|---|
| Symbol | |
|---|
| ID | 7874054 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thauera sp. MZ1T |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011662 |
|---|
| Strand | - |
|---|
| Start bp | 4206018 |
|---|
| End bp | 4207850 |
|---|
| Gene Length | 1833 bp |
|---|
| Protein Length | 610 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 643700754 |
|---|
| Product | lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA |
|---|
| Protein accession | YP_002890778 |
|---|
| Protein GI | 237654464 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
|---|
| TIGRFAM ID | [TIGR02203] lipid A export permease/ATP-binding protein MsbA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTGCCG TACCCGAACC GATCGCATCC AGCACGCCCG CCCCCGCCGT CGAGAAGCCG
CCCTCGAGCA GCATGAAGGT CTACCTCCGC CTGCTCGGCT ACACCCGGCC CTTCCTCGGC
TACTTCGCGC TCAGCATCCT CGGCTTCGCC ATCGCAGGCG CCTGCAAGGC GGGGCTGGCG
AGCGTGCTCA AGTACTTCAT CGACGGTCTC GCCGCGCCCG ATGCGCCGAT CGCCACCGGC
CTGCCCTGGC TGGACGCGCT CGACCTGATC TTCGCCATCC CGCTCATGAT CGTCGTCATC
GCGCTCGTCG AAGGCCTCGG CACCTTCCTC GGCAACTACG GCATCTCGCG CGTCTCGCTC
GGCCTCATCC ACGACCTGCG CACCCAGCTC TTCGGCAGCT TCCTGGTGCT GCCCAACCGC
TTCTACGACG CCAACAACTC CGGCCACCTG GTCTCCAAGC TCACCTACAA CGTGTCGATG
GTGACCGACG CGGCCACCGA TGCGGTCAAG ATCCTGTTCC GCGAGGGCCT CACCGTCGTC
GCGCTGCTCG GCTACCTGCT GTGGATGAAC TGGCGCCTGA CGCTGACCCT GCTGGTCGTG
CTGCCCGCGA TCGCCTGGCT GGTGTCCAAC GCCAGCCGCA AGTTCCGCCG CCTGTCGAAG
AACATCCAGA CCTCGATGGG CGAGGTCACC CACGTCGCCT CCGAGACCAT CCAGGGTTAC
CGCGTGGTGC GCAGCTTCGG CGGCGAGGAC TACGAGCGCG CGCGCTTCCG CAAGGCCAGC
ACCGACAACA CCAAACGACA GCTGAAGATG GTGCGCACGC AGGAGACCTT CTCGGCGCTG
ATGCACCTGA TCGTGTATTC GTCGATGGGC CTGCTGCTCT TTACCGTGCT GAAGGTGCGC
GGCGACGCCT CGGCTGGCGA CGTGGTCGCC TACATCACTG CCGCCGGCCT GCTGCCGCGC
GCGATCCAGC TGCTCGGCGG CGTCAGCGCG CGCATCCAGC GCGGCGTCGC GGCGGCCGAC
AGCATCTTCG AGCAGCTCGA CGAGGCCCCC GAGCCCGACA CCGGCAGCGT CGAGCGCGAG
CGCATCACCG GCCGCGTCGA GGCGAAAGGG CTGGGCTTCG GCTATCCAGG CGCGGAAGGT
CGCGCGCTGC AGTGCATCGA CTTCAAGGCC GAGCCGGGCC AGATGATCGC GCTGGTCGGC
AAGTCGGGGA GCGGCAAGTC GACCCTCGCC AACCTCATCC CGCGCTTCTA CCAGCACGAC
GCGGGCCGGC TGCTGGTCGA TGGCGTGGCG GTCGAGGACT ACACGCTCGC CAACCTGCGC
CACCACATCG CGTTGGTCAC CCAGCAGGTC ACGCTCTTCA ACGGCACGGT GGCGCAGAAC
ATCGCCTACG GCGAGCTCGC CGGCGCCAGC CGCGAGCAGA TCGTCGCCGC CGCCGAAGCC
GCCAACGCGT GCGAGTTCAT CGACCGCCTG CCGCAGGGCT TCGACACCGA GATCGGAGAG
AACGGCGTGC TGCTCTCCGG CGGCCAGCGC CAGCGCCTCG CGATCGCGCG CGCGTTGCTC
AAGAACGCGC CCATCCTGAT CCTCGACGAG GCTACCTCGG CGCTCGACAC CGAGTCCGAG
CGCCTCATCC AGGCGGCGAT CGAGCGCCTG ATGGAAGGGC GGACGACGAT CGTGATCGCG
CATCGGCTGT CGACGATCGA GAAGGCGGAC CAGATCCTGG TGATGGAGGC CGGCCGCATC
GTCGAGCGCG GCACGCATGC GGAGCTGGTG GCCCGCGGCG GCGTCTACGC GCGCCTGCAG
GCGATGGGGA TCGAGCCGGA CGCCGCGGCT TGA
|
|---|
| Protein sequence | MTAVPEPIAS STPAPAVEKP PSSSMKVYLR LLGYTRPFLG YFALSILGFA IAGACKAGLA
SVLKYFIDGL AAPDAPIATG LPWLDALDLI FAIPLMIVVI ALVEGLGTFL GNYGISRVSL
GLIHDLRTQL FGSFLVLPNR FYDANNSGHL VSKLTYNVSM VTDAATDAVK ILFREGLTVV
ALLGYLLWMN WRLTLTLLVV LPAIAWLVSN ASRKFRRLSK NIQTSMGEVT HVASETIQGY
RVVRSFGGED YERARFRKAS TDNTKRQLKM VRTQETFSAL MHLIVYSSMG LLLFTVLKVR
GDASAGDVVA YITAAGLLPR AIQLLGGVSA RIQRGVAAAD SIFEQLDEAP EPDTGSVERE
RITGRVEAKG LGFGYPGAEG RALQCIDFKA EPGQMIALVG KSGSGKSTLA NLIPRFYQHD
AGRLLVDGVA VEDYTLANLR HHIALVTQQV TLFNGTVAQN IAYGELAGAS REQIVAAAEA
ANACEFIDRL PQGFDTEIGE NGVLLSGGQR QRLAIARALL KNAPILILDE ATSALDTESE
RLIQAAIERL MEGRTTIVIA HRLSTIEKAD QILVMEAGRI VERGTHAELV ARGGVYARLQ
AMGIEPDAAA
|
|---|
| |