| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmz1t_3747 |
|---|
| Symbol | psd |
|---|
| ID | 7873745 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thauera sp. MZ1T |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011662 |
|---|
| Strand | - |
|---|
| Start bp | 4118376 |
|---|
| End bp | 4119266 |
|---|
| Gene Length | 891 bp |
|---|
| Protein Length | 296 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 643700692 |
|---|
| Product | phosphatidylserine decarboxylase |
|---|
| Protein accession | YP_002890716 |
|---|
| Protein GI | 237654402 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0688] Phosphatidylserine decarboxylase |
|---|
| TIGRFAM ID | [TIGR00163] phosphatidylserine decarboxylase precursor |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGTCCGAAC GCCTCGCCGT CGCCCTCCAG TACGCCCTGC CCAAGCGCCT GCTCACCCAG
CTTGCCGGAA AGCTCGCCGG CCTGGAGGGG GGCAAGGCGA CGACCGCGGT GATCCGCTGG
TTCGCGAAGC GCTACGGGGT GAATATGGCC GAGGCCGCGA ACGCCGATCC GGCGAGCTAC
GCGAGCTTCA ACCAGTTCTT CACCCGCCCG CTGCGCGAAG GCGTGCGGCC GATCGCCGAT
GCGGACTTCG TCTGCCCGGT CGACGGGGCG ATCAGTCAGT TCGGGCCGAT CGAGTTCGAC
CAGGTCTTCC AGGCCAAGGG CCACTTCTAT TCCACCACGG CGCTCGTGGG CGGCGACCGG
GCGCTCGCCG CGCGCTTCGA GAACGGCGAC TTCGCCACGA TCTACCTGTC GCCGCGCGAC
TACCACCGCA TCCACATGCC CTGCGCCGGG CGGCTGACGC AGATGATCCA CGTGCCGGGC
GAACTGTTCT CGGTGAATCC CGCCACCGCG CGCGGCGTGC CCGGTCTGTT CGCGCGCAAC
GAGCGCGTGG TGTGCGTGTT CGAGGGCGAA TTCGGCCCCT TCGTGATGGT GCTGGTGGGC
GCGACCATCG TGGGCAGCAT GGCCACCGTG TGGCACGGCG TGGTCAATCC GCCGCGCCGG
CCGGACATCG TCAAGCGCGG CTATGCAGAG GGCGAGGTGG TGCTGGAGAA GGGCGCCGAG
ATGGGCCGCT TCCTGCTCGG CTCGACGGTG GTGATGCTGT TCCCGCAGGA CGTGCTGCGC
TTCGGCTCCG ACTGGGCGCC GGGCGGCCCG GTGCGGATGG GCGAGCCGAT GGCGCGTGCG
AAGTCGGGCG CGCCCTCCGA TGGTGCGCCA GCACTCGCCG ATGCACCGTG A
|
|---|
| Protein sequence | MSERLAVALQ YALPKRLLTQ LAGKLAGLEG GKATTAVIRW FAKRYGVNMA EAANADPASY
ASFNQFFTRP LREGVRPIAD ADFVCPVDGA ISQFGPIEFD QVFQAKGHFY STTALVGGDR
ALAARFENGD FATIYLSPRD YHRIHMPCAG RLTQMIHVPG ELFSVNPATA RGVPGLFARN
ERVVCVFEGE FGPFVMVLVG ATIVGSMATV WHGVVNPPRR PDIVKRGYAE GEVVLEKGAE
MGRFLLGSTV VMLFPQDVLR FGSDWAPGGP VRMGEPMARA KSGAPSDGAP ALADAP
|
|---|
| |