| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmz1t_3704 |
|---|
| Symbol | |
|---|
| ID | 7873703 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thauera sp. MZ1T |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011662 |
|---|
| Strand | + |
|---|
| Start bp | 4069993 |
|---|
| End bp | 4071129 |
|---|
| Gene Length | 1137 bp |
|---|
| Protein Length | 378 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 643700650 |
|---|
| Product | twitching motility protein |
|---|
| Protein accession | YP_002890674 |
|---|
| Protein GI | 237654360 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG5008] Tfp pilus assembly protein, ATPase PilU |
|---|
| TIGRFAM ID | [TIGR01420] pilus retraction protein PilT |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAACGCG ACCAGGCCCT CAAGTTCATG CACGACCTGC TGCGGCTGAT GCTGCAGAAG
AACGGCTCGG ATCTCTTCAT CACCGCCGGC TTCCCGCCTG CGATCAAGGT CGACGGCCGC
ATCGTGCCGC AGTCGAACCA GATCCTGCAG CCGCAGCACA CCACCGAGCT GGCGCGCGCG
ATCATGAACG ACCGCCAGGC CGCCGACTTC GAGACCCACA AGGAGTGCAA CTTCGGCATC
TCGCCGGCGG GCATCGGCCG CTTCCGCGCC AATGCCTTCG TGCAGCAGGG CCGCGTCGCC
CTGGTGCTGC GCACCATCCC GCAGAAGATC CCCAATTTCA AGGAGCTCGG CCTGCCGCCG
GTGCTCACCG AGATCGCGCT CGCCAAGCGC GGGCTGGTGA TCTTCGTCGG CGGCACCGGC
ACCGGCAAGA CCACCTCGCT CGCATCCCTG GTCGATTACC GCAACGAGAA CACCTACGGC
CACATCATCA CCATCGAGGA CCCGATCGAG TTCGTGCACC AGCACAAGAA CTGCATCGTG
TCCCAGCGCG AGATCGGCAT CGACACCGAG TCCTGGATGT CTGCGCTCAA GAACACCCTG
CGCCAGGCGC CCGACGTGAT CCTGATGGGC GAGATCCGCG ACCGCGAGAC AATGGACTAC
GCGATCGCCT TCGCCGAGAC CGGCCACCTG TGCCTGGCCA CCCTTCACGC CAACAGCGCC
AACCAGGCGA TCGACCGCAT CATCAATTTC TTCCCGGAAG ACCGCCGCCA GCAGCTGCTG
ATGGACCTGT CGCTGAACCT GCGCGCGATG GTCTCGCAGC GCCTGCTGCC GATGAAGGAC
CGCAAGGGCC GCGTACCGGC GGTGGAGGTG ATGCTCAACT CGCCGCTGAT CGCCGACCTG
GTCTTCAAGG GCAACGTGCC CGAGATCAAG GACGTGATGA AGCGCTCGCG CGAGCTCGGC
ATGCAGACCT TCGACCAGTC GCTGTTCCAG CTCTACGAGG ACGACCTGAT CGGCTACGAG
GACGCGCTGC GCAACGCCGA CTCGGTGAAC GACCTGCGCC TGCAGATCAA GCTCAACAGC
CGCCACGGCG ACCCCCTCGC GGCCGGCGGC GGCATCCAGA ACCTCGGCAT CCTGTAG
|
|---|
| Protein sequence | MERDQALKFM HDLLRLMLQK NGSDLFITAG FPPAIKVDGR IVPQSNQILQ PQHTTELARA
IMNDRQAADF ETHKECNFGI SPAGIGRFRA NAFVQQGRVA LVLRTIPQKI PNFKELGLPP
VLTEIALAKR GLVIFVGGTG TGKTTSLASL VDYRNENTYG HIITIEDPIE FVHQHKNCIV
SQREIGIDTE SWMSALKNTL RQAPDVILMG EIRDRETMDY AIAFAETGHL CLATLHANSA
NQAIDRIINF FPEDRRQQLL MDLSLNLRAM VSQRLLPMKD RKGRVPAVEV MLNSPLIADL
VFKGNVPEIK DVMKRSRELG MQTFDQSLFQ LYEDDLIGYE DALRNADSVN DLRLQIKLNS
RHGDPLAAGG GIQNLGIL
|
|---|
| |