| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmz1t_3671 |
|---|
| Symbol | |
|---|
| ID | 7873176 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thauera sp. MZ1T |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011662 |
|---|
| Strand | - |
|---|
| Start bp | 4030137 |
|---|
| End bp | 4034372 |
|---|
| Gene Length | 4236 bp |
|---|
| Protein Length | 1411 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 643700617 |
|---|
| Product | ATP-dependent helicase HrpA |
|---|
| Protein accession | YP_002890641 |
|---|
| Protein GI | 237654327 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1643] HrpA-like helicases |
|---|
| TIGRFAM ID | [TIGR01967] ATP-dependent helicase HrpA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGGGCTG AACACAAGGG CGCGCGCCGC CCGTCCGCGC TGCCGAACTT CGATGACTGT
CTGAGCGGCG ACCGCCCGCG CCTGCGCCGC ATGGCGCGCG ACCTCTCCCA CCCGTCACGC
GCGGACGAGC GCGCCACGGC GCAGCGCCTG CGCCTGCGGG CGGACTTCGA TGCCCTGCTC
GAACGCTCGC GCGCCGCGCT GCGCGCACGC CGCGCCGCCT TGCCCGTGCC GGACTTCCCG
CCCGAGCTGC CAGTGTCCGG GCGCCGCGAC GAGATCGCCA CGGCCCTCGC CGCCCACCAG
GTCATCATCG TGTGCGGCGA GACCGGCTCG GGCAAGACCA CCCAGCTGCC GAAGATCGCG
ATGACGCTCG GCCGCGGCGT CGCCGGCCTC ATCGGCCACA CCCAGCCGCG TCGCCTGGCC
GCACGCGCCA CCGCGAGCCG CATCGCGCAG GAGCTCAAGA GCCCGCTCGG CGAGGTCGTG
GGCTACAAGA TCCGCTTCAC CGACAAGACC GGCGAGCGCA GCCACGTCAA GCTGATGACC
GACGGCATTC TGCTCGCCGA GACCCAGACC GACCCGCTGC TCGCCGCCTA CGACACGCTG
ATCATCGACG AGGCGCACGA GCGCAGCCTC AACATCGATT TCCTGCTCGG CTACCTGAAG
ACCCTGCTGC CACGCCGGCC GGATCTGAAG GTGGTGGTGA CCTCGGCGAC GCTGGATGCC
GAGCGTTTCG CCCGGCACTT TGCCGATGCC GCGGGCAAGC CGGCGCCGGT GATCGAGGTG
TCGGGCCGGT TGTATCCGAT CGAGATGCGC TACCGGCCGG TGGAGAGCGA GGAGATTGAC
CCCGCCGCGG CCGCGCGCAG CGCCGCCAAG GGTGGCAGGG AGGCCGCCAA GGACAGGAGC
CGCGACCTCA TGGACGCGCT GGTCGATGCG GTCGACGAGG CCCAGCGCTG CGGCCCGGGT
GACGTGCTGG TTTTCCTGCC CGGCGAGCGC GAGATCCGCG AGGCCGCCGA GGCGCTGCGC
AAGGCGCACC ACCTGCCCGG CACCGAGATC CTGCCGCTGT TCGCGCGCCA GTCGGCGCAG
GAGCAAGCGC GCGTGTTCTC GGCCTCCAAC GGCCGCCGGG TGGTGCTGTC GACCAACGTC
GCCGAGACCT CGCTGACCGT GCCGGGCATC CGCTACGTGG TCGACACCGG ACTCGCGCGC
ATCAAGCGCT ACTCGCCGCG CAACAAGGTC GAGCAGCTGC AGGTCGAGAA GATCGCCCGG
TCGGCCGCGC AGCAGCGCGC CGGGCGCTGC GGTCGTGTCA TGGACGGCAT CTGCATCCGC
CTCTACGACG AGGACGACTT CAACCGCCGC CCGGCGCACA CCGATCCCGA GATCCTGCGG
TCGTCGCTCG CCGGCGTGAT CCTGCGCATG AAGGCCCTGA AGCTCGGCGC GGTGGAGGAC
TTCCCCTTCA TCGACGCGCC CGGCGCGCGC CTGATCGGCG ACGGCTACGC GCTGCTGGCC
GAGTTGGGCG CGGTCAGCGA CGACGATGAA CGCAAGCTCA CCCCGACCGG CGTCGAGCTC
GCCAAGCTGC CGCTCGACCC GCGCATCGGC CGCATGATCC TGGCCGCGCG CGACCGTGGC
GCGCTCGCCG AGTTGCTGGT GATCGCCGCC GCGCTGTCGG TGCAGGACCC GCGCGAGCGC
CCGCAGGACA GCCCGGGTGC CGCCGACCAG GCGCACGCCA GGTTCCGCGG CGGGGAGCAG
GATCAGAAGT CCGAGTTCCT GTGGTACTGG CACCTGTGGA AGGCCTGGGA CGAGGTCCAG
CGCCACGAGT CCTCCAGCAA GCAGAAGGCC TGGTGCAAGA AGCACTTCCT CAACTACATG
CGCATGCGCG AGTGGCGCGA TGTGTTCGCC CAGCTCCACA CCCTGTGCGC CGAGCACGGC
TGGAAGGAGA ACGAACAGCC GGCGAACTAC GAGGCGATCC ACAAGGCGCT GCTCGCCGGG
CTGCTCGGCA ACATCGGCTG CAAGGTCGAG GATGCCTCGG GGCCGCAGGC CGGCGCCTAC
CTCGGCGCGC GCGGGATCAA GTTCTGGCCG CACCCGGGCT CCGCGCTGGC GAAGAAGGCC
GGAAAGTGGA TCATGGCCGC CGAGCAGGTC GAGACCAGCC GCTTGTTCGG GCGCTGCATC
GCGCGCATCG AGCCGGAGTG GGTGGAGGAG GTCGGCGGCC ACCTGATCAA GCGCCAGGTG
TTCGAGCCGC ACTGGTCGAA GGCGTCCGGC GCGGTGCGCG CCTGGGAGCG CGGCACGCTG
TACGGACTGG TGATCTATCC GCGCCGCGGC GTGGCCTATC GCGACATCGA CCCCGCGCTG
TGCCGCGAGC TCTTCATCCG CGAGGGCCTG GTGCAGGGCG AGATCGCCGA GGGGCCGGCG
CGCGCGATGG CCTTCCTCGC CCATAACCAG CGCCTGGTGG CGGAGATCGA GCGCCTCGAG
CACAAGTCGC GCCGCCCCGA CGTGCTGGTG GACGAGACCC TGATCGAGGC CTTCTACGAC
AGCAAGCTCC CCGCGGAGGT CTGCGACCTG GCGGGGCTGG AGGCGTGGCG CAAGCCGGCG
GAGAAGGCCG AGCCCAAGCT GCTGCATCTG TCGCGCGAGC AACTGATGCG CCACGACGCG
GAAGGGGTGA CCACCGACCG TTTCCCGCCG ACGCTGGAGG TGCTCGGGCA GAAGTTGAAG
CTCGCCTATC TGCACCAGCC TGGCGAGGCC GACGACGGCG TGACGCTCGC GGTGCCGCTG
GCGATGCTCA ACCAGATCCC CGCCAACCGC TGCGAGTGGC TGGTGCCGGG ACTGCTCGAA
GAGAAGGTTG CGGCGCTGAT GAAGACCGTG CCGCAGAAGC ACCGCCACCG CCTGCAGCCG
GTGGCCGAGA GCGCGGCGGC CTTCATGGCG GTCTTCGAGG CCGGCGAGTT CGACACCGAC
GAGCCGCTGC TGAAGATGCT GCAACGCTTC GTGGAGGAGC GCGTGCAGTT GAAGCTGCCG
CTGGAGAGCT TCCGCCCGGA GAACCTGAAG CCGCACTGCT TCATGAACTT CCGCGTGATC
GACGAGCACG GCCGCTTGAT GGGGCAGTCG CGCAACCTGA TGGAGCTGCG TGCGCGCTTC
CGCGAGCAGG TGGCGGCGCG CTTCTCGGCG GCGAAGATCG GCGGCGCGCT CGCGGGGGCG
CTGTCGGTGG TGGGCGTCGG GGGCGCGGGT GGTGGCCAAG GCGTCGGTGC CGGCGGAGCG
GGCGTCAGCG CGCGGGGGGC CGGATCCGAC GCCGTTGCGG GCGAGGTCGC CGGCCGTGCG
CGCTCCGGCG CGGATGCGCG TGATGCCGCG GCGGATGTGG GTGGCCGTGC CGGGGCGGGG
CAGCCGGGGG GCAAAGGGAG CGGCAAGGCG GCGGGCGACC CGGCAGGCCG GAGCGCTGCG
CCTGCCGAAC TCCCGGCGCC GGTGCTGTCC GGCTTCACTG CGTGGACTTT CGGCGCCCTG
CCCGAGTTGC TCGAGGTGCG CGTCGCCGGC CGTGAGGTGA TCGGTTTTCC TGCGCTGCAC
GACGATGGCG ACAGCGTCTC GTTACGCCCC CACGACACGC CCGAGGAGGC GTCGCGCGTG
CATCGCCGCG GCCTCGCCCG CCTGTTCGCG CTCAACCTCA AGGATCAGGT GCGCGCGGTC
GAGCGTCTGC CCGGCTTGCG CGAGCTCGCG CTGCAGTACA TGGGCTTCGG CACCGAGGCC
GAGCTGAAGG CGCGCCTGAT CGAGGCGACG CTGGGCCGCT GCTGCCTGCT CGAGCCTTTG
CCTACGGATG CCGACGCGTT CGCGAAGCGC TGCGCCGAGG CCAAGTCGCG GGTGAGCCTG
GTTGCGCAGG AGTTCATGCG CCTGACCGGC CAGCTGCTGG TCGAGCATGC GGCGCTGCAG
AAGCGCCTGT CCGGGCTGAA GACCTTTCCC GAGGTGGTGG CCGATATCCA GGGCCAGCTC
GGTGCGCTGC TGCCGAAGGA CTTCCTCGTC GCCTTCGAGT GGGACAAGCT GGCGCACTTC
GCACGCTATC TCAAGGGTGC CGCGGTGCGG CTCGACAAAC TCCGCAACAA TCCGGCGCGC
GACGCCCCAG GCCATGGCGG AGTGGAAGCA GCTCGCCCAG GCCTGGGAGC GCGAGCGCCT
CGCCCGCCGG CGCGCGGGCG TGGAAGATCC GGCGCTGGAA GAGTTCCGCT GGCTGCTGGA
GGAGTTGCGC GTGGGCTTGT ACGCGCAGGA GCTTAG
|
|---|
| Protein sequence | MRAEHKGARR PSALPNFDDC LSGDRPRLRR MARDLSHPSR ADERATAQRL RLRADFDALL
ERSRAALRAR RAALPVPDFP PELPVSGRRD EIATALAAHQ VIIVCGETGS GKTTQLPKIA
MTLGRGVAGL IGHTQPRRLA ARATASRIAQ ELKSPLGEVV GYKIRFTDKT GERSHVKLMT
DGILLAETQT DPLLAAYDTL IIDEAHERSL NIDFLLGYLK TLLPRRPDLK VVVTSATLDA
ERFARHFADA AGKPAPVIEV SGRLYPIEMR YRPVESEEID PAAAARSAAK GGREAAKDRS
RDLMDALVDA VDEAQRCGPG DVLVFLPGER EIREAAEALR KAHHLPGTEI LPLFARQSAQ
EQARVFSASN GRRVVLSTNV AETSLTVPGI RYVVDTGLAR IKRYSPRNKV EQLQVEKIAR
SAAQQRAGRC GRVMDGICIR LYDEDDFNRR PAHTDPEILR SSLAGVILRM KALKLGAVED
FPFIDAPGAR LIGDGYALLA ELGAVSDDDE RKLTPTGVEL AKLPLDPRIG RMILAARDRG
ALAELLVIAA ALSVQDPRER PQDSPGAADQ AHARFRGGEQ DQKSEFLWYW HLWKAWDEVQ
RHESSSKQKA WCKKHFLNYM RMREWRDVFA QLHTLCAEHG WKENEQPANY EAIHKALLAG
LLGNIGCKVE DASGPQAGAY LGARGIKFWP HPGSALAKKA GKWIMAAEQV ETSRLFGRCI
ARIEPEWVEE VGGHLIKRQV FEPHWSKASG AVRAWERGTL YGLVIYPRRG VAYRDIDPAL
CRELFIREGL VQGEIAEGPA RAMAFLAHNQ RLVAEIERLE HKSRRPDVLV DETLIEAFYD
SKLPAEVCDL AGLEAWRKPA EKAEPKLLHL SREQLMRHDA EGVTTDRFPP TLEVLGQKLK
LAYLHQPGEA DDGVTLAVPL AMLNQIPANR CEWLVPGLLE EKVAALMKTV PQKHRHRLQP
VAESAAAFMA VFEAGEFDTD EPLLKMLQRF VEERVQLKLP LESFRPENLK PHCFMNFRVI
DEHGRLMGQS RNLMELRARF REQVAARFSA AKIGGALAGA LSVVGVGGAG GGQGVGAGGA
GVSARGAGSD AVAGEVAGRA RSGADARDAA ADVGGRAGAG QPGGKGSGKA AGDPAGRSAA
PAELPAPVLS GFTAWTFGAL PELLEVRVAG REVIGFPALH DDGDSVSLRP HDTPEEASRV
HRRGLARLFA LNLKDQVRAV ERLPGLRELA LQYMGFGTEA ELKARLIEAT LGRCCLLEPL
PTDADAFAKR CAEAKSRVSL VAQEFMRLTG QLLVEHAALQ KRLSGLKTFP EVVADIQGQL
GALLPKDFLV AFEWDKLAHF ARYLKGAAVR LDKLRNNPAR DAPGHGGVEA ARPGLGARAP
RPPARGRGRS GAGRVPLAAG GVARGLVRAG A
|
|---|
| |