| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmz1t_3651 |
|---|
| Symbol | |
|---|
| ID | 7873156 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thauera sp. MZ1T |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011662 |
|---|
| Strand | + |
|---|
| Start bp | 4008118 |
|---|
| End bp | 4009542 |
|---|
| Gene Length | 1425 bp |
|---|
| Protein Length | 474 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 643700592 |
|---|
| Product | nitrogen metabolism transcriptional regulator, NtrC, Fis Family |
|---|
| Protein accession | YP_002890621 |
|---|
| Protein GI | 237654307 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | [TIGR01818] nitrogen regulation protein NR(I) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.071917 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACACCG TCTGGATCAT CGACGACGAC CGCTCGATCC GCTGGGTGCT GGAAAAGGCG
CTCGGCCGCG AGGGCATCGA CCACGCCAGC TTCAGCTCCG CCGGCGACGC GCTCGCCGAG
CTCGAGCGCG CACCGCAGCC GCCGGCCGCG CTGCTATCCG ACATCCGCAT GCCCGGCGAG
TCCGGGCTGG ACCTGCTGCA GAAGGTGAAG GAGCGCCACC CGCAGCTGCC GGTCATCATC
ATGACCGCCT ACTCCGACCT CGACAGCGCA GTCGCGGCCT TCCAGGGCGG CGCCTTCGAG
TATCTGCCCA AGCCCTTCGA CGTCGACCAG GCGGTCGCGC TCGTCCGTCG TGCGCTGGAG
CAGACCGCGC ACCAGAACGG TGCGAGCGAA GAGGCCACCC TGGCCCCCGA GATCCTCGGC
CAGGCCCCGG CGATGCAGGA GGTTTTCCGC GCCATCGGGC GGCTCGCCCA CTCGCACGCC
ACCGTGCTGA TCAACGGCGA GTCGGGCAGC GGCAAGGAAC TGGTCGCGCG CGCCCTGCAC
CGCCACAGCC CGCGCCGCGA CGCGCCCTTC ATCGCCATCA ACACCGCGGC CATCCCGCGC
GACCTGCTCG AATCCGAACT CTTCGGCCAC GAGCGCGGCG CCTTCACCGG CGCCGCCACC
CAGCGCCGCG GCCGCTTCGA GCAGGCCGAC GGCGGCACGC TGTTCCTCGA CGAGATCGGC
GACATGCCGG CCGAGCTGCA GACGCGGCTG CTGCGCGTGC TCTCCGACGG CCACTTCTAC
CGCGTCGGCG GCCAGCAACC GATCCGCGCC AACGTGCGCG TGATCGCCGC CACCCACCAG
GACCTGGAGG AGCGCGTGCG CCAGGGCCTG TTCCGCGAGG ACCTCTTCCA CCGCCTAAAC
GTCATCCGCC TGCGCCTGCC GCCGCTGCGC GAGCGCCATG AGGACATCCC CTTGCTGGTG
CGGCACTTCC TGCAGAAGAG CGCGCAGGAG CTCGGCGTCG AGCGCAAGCG CATCTCGGAG
GCCACGCTCG AATACCTGCA GGCTCAGCCT TTCCCGGGCA ACGTGCGCCA GCTCGAGAAC
CTGTGCCACT GGCTCACCGT GATGGCGCCG GCGCAGGTGG TGGAGGTCGC CGACCTGCCA
CCCGAGATGC GCGAGCAACC CGGCCGCGAG TCGCCATCGA ACTGGATGGA GGGCCTGGGC
AGCGAGGCCG ACCGCCTGAT CGCCTCGCGC CCCGGAGAGG TGTTCGACCG CCTCACGCGC
GATTTCGAGC GCACCCTGAT CCGTCGTGCG CTGGCCGCCA CCGGCGGCCG CCGCATCGAG
GCCGCGCAGC TGCTCGGCAT CGGCCGCAAC ACCATCAGCC GCAAGATCCA GGAGCTGGGC
ATGGACGAGG AGCGCGCGCC GGAGACGGAG GAAAGCGGGC GCTGA
|
|---|
| Protein sequence | MNTVWIIDDD RSIRWVLEKA LGREGIDHAS FSSAGDALAE LERAPQPPAA LLSDIRMPGE
SGLDLLQKVK ERHPQLPVII MTAYSDLDSA VAAFQGGAFE YLPKPFDVDQ AVALVRRALE
QTAHQNGASE EATLAPEILG QAPAMQEVFR AIGRLAHSHA TVLINGESGS GKELVARALH
RHSPRRDAPF IAINTAAIPR DLLESELFGH ERGAFTGAAT QRRGRFEQAD GGTLFLDEIG
DMPAELQTRL LRVLSDGHFY RVGGQQPIRA NVRVIAATHQ DLEERVRQGL FREDLFHRLN
VIRLRLPPLR ERHEDIPLLV RHFLQKSAQE LGVERKRISE ATLEYLQAQP FPGNVRQLEN
LCHWLTVMAP AQVVEVADLP PEMREQPGRE SPSNWMEGLG SEADRLIASR PGEVFDRLTR
DFERTLIRRA LAATGGRRIE AAQLLGIGRN TISRKIQELG MDEERAPETE ESGR
|
|---|
| |