| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmz1t_3565 |
|---|
| Symbol | |
|---|
| ID | 7873071 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thauera sp. MZ1T |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011662 |
|---|
| Strand | + |
|---|
| Start bp | 3910221 |
|---|
| End bp | 3911666 |
|---|
| Gene Length | 1446 bp |
|---|
| Protein Length | 481 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 643700506 |
|---|
| Product | amino acid carrier protein |
|---|
| Protein accession | YP_002890536 |
|---|
| Protein GI | 237654222 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1115] Na+/alanine symporter |
|---|
| TIGRFAM ID | [TIGR00835] amino acid carrier protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.0685949 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAAGCAT TCGCCAACCA GGTCGTCGAC CTGCTCAACG GCCTGCTCTG GGGCAAGATC
CTGATCTGGC TGCTGGTCGG CACCGGCATC TATTTCACCC TGCGCCTGGG CTTCATCCAG
TTGCGCCACT TCGGCCACAC CTTCACGGTG CTGCGCGGCA GCCGCCGGTC CGACGCCTCC
GGCATCTCGT CCTTCCAGGC CCTGTGCACC TCGCTCGCTG CGCGCGTGGG CACCGGCAAC
ATCGCCGGCG TGGCGGTGGC GATCACGCTC GGCGGCCCGG GCGCGATCTT CTGGATGTGG
GTGATCGCGC TCGTGGGCAT GGCCACCGGC TTCGCCGAGG CCACGCTCGC GCAGCTCTTC
AAGCAGCGCG ACGACAAGGG GCAGTTCCGC GGCGGCCCCG CCTACTACAT GGAGAAAGGT
CTCGGCCAGC GCTGGGCGGG CACGATGTTC TCGATCTTCC TGATCATCGC CTTCGGCTTC
GCCTTCAACT CGGTGCAGTC GAACACGATC GCCGGCGCGA TGGTCGGCGC CTTCGAGCTC
GACATGGGCA GCTTCACGCT GGGCGGCAAC GAGGTCGCCG TCGCGGCGCT GGTGGTCGGC
GTGGCGGTCA CCGTGCTCAC CGCGGTGATC ATCTTCGGCG GCCTGCGCTC GATCGCGCGC
TTCTCCGAGC TCGCCGTGCC CTTCATGGCG GTCGGTTACC TGGTGGTGGC GGTCGGCATT
CTCCTCGTCA ACCTCGGCGA GGTGCCGGGC GTGCTGGCGA TGATCGTCAA GAGCGCCTTC
GGCTTCCACG AAGCCGCCGC CGGCGGCATC GGCGCGGCCA TCCTCAACGG CTTCAAGCGC
GGCCTGTTCT CCAACGAGGC CGGCATGGGC TCGGCGCCCA ACGCCGCCGC CGCGGCCACG
CCCTACCCGC CGCACCCGGC CTCGCAGGGC TACGTGCAGA TGGCCGGCGT GTTCATCGAC
ACGATCCTGA TCTGCACCGC GTCCGCCGCC ATCATCCTGC TCGCCGGTCC GGTCGAAGGC
ACCGGCGTCG GCCTGGTGCA GAACGCCCTG ACCAGCGAAG TGGGCGGCTG GGGCAAGTAC
TTCCTCGCCG TCGTGGTGCT GTTCTTCGCC TTCACCTCGA TCGTCGCCAA CTACTTCTAC
GCCGAGAACT GCCTGGTGTT CATCGAGCAC AACCACCCCG CGGGCCTGCT GATCTTCCGC
CTGATCGTGC TGGCCATGGT GATGTTCGGC GCGATCGGCT CGCTGCCCTT CGTGTGGAAC
TTCGCCGACG TGGCGATGGG CCTGATGGCG ATCACCAACC TCGTCGCCAT CCTGTTGCTC
TCGGGCCTGG TGGTGAAGCT GGCGAAGGAC TACAACGCCC AGCGCGCCGC CGGCAAGCTG
CCCACCTTCG ACGCCCGCGC GTACCCCGAG ATCCGCAGCA AGCTCACGCC GGGCATCTGG
GACTGA
|
|---|
| Protein sequence | MEAFANQVVD LLNGLLWGKI LIWLLVGTGI YFTLRLGFIQ LRHFGHTFTV LRGSRRSDAS
GISSFQALCT SLAARVGTGN IAGVAVAITL GGPGAIFWMW VIALVGMATG FAEATLAQLF
KQRDDKGQFR GGPAYYMEKG LGQRWAGTMF SIFLIIAFGF AFNSVQSNTI AGAMVGAFEL
DMGSFTLGGN EVAVAALVVG VAVTVLTAVI IFGGLRSIAR FSELAVPFMA VGYLVVAVGI
LLVNLGEVPG VLAMIVKSAF GFHEAAAGGI GAAILNGFKR GLFSNEAGMG SAPNAAAAAT
PYPPHPASQG YVQMAGVFID TILICTASAA IILLAGPVEG TGVGLVQNAL TSEVGGWGKY
FLAVVVLFFA FTSIVANYFY AENCLVFIEH NHPAGLLIFR LIVLAMVMFG AIGSLPFVWN
FADVAMGLMA ITNLVAILLL SGLVVKLAKD YNAQRAAGKL PTFDARAYPE IRSKLTPGIW
D
|
|---|
| |