| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmz1t_3421 |
|---|
| Symbol | lpxC |
|---|
| ID | 7873912 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thauera sp. MZ1T |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011662 |
|---|
| Strand | - |
|---|
| Start bp | 3743380 |
|---|
| End bp | 3744303 |
|---|
| Gene Length | 924 bp |
|---|
| Protein Length | 307 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 643700361 |
|---|
| Product | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase |
|---|
| Protein accession | YP_002890392 |
|---|
| Protein GI | 237654078 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0774] UDP-3-O-acyl-N-acetylglucosamine deacetylase |
|---|
| TIGRFAM ID | [TIGR00325] UDP-3-0-acyl N-acetylglucosamine deacetylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.731548 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATCCGGC AGCGCACCCT GAAATCCGTC GTCACGGCGA CCGGCGTCGG CTTGCACGGC
GGTCGCAAGG TGACCCTGAC CCTGCGGCCG GCGGCGCCCG ACACCGGCAT CGTCTTCCAC
CGCGTCGACC TCGACCCGCC CCTGACCCTT CCTGCCGATC CCTATGCAGT GTGCGACACG
CGCATGTGCT CCGGGCTGGA GCAGGGCGGG CACAAGGTCG GAACGGTCGA GCACCTGATG
TCGGCGCTGG CCGGGCTGGG CATCGACAAC CTGCATGTGG ACGTCGATGC GCCCGAGATC
CCGATCCTCG ATGGCAGCTC CGCCCCCTTC GTGTTCCTGC TCCAGTCGGC CGGCATCGAG
GAGCAGAGGG CGGCGAAGAA GTTCCTGCGC GTGAAGAAGG CGGTCGAGTA CGTGGAGGGC
GACAAGTGGG TCCGGCTCGA ACCCTACGAT GGCTTCCGCC TGGCGTTCTC GATCGTGTTC
AACCATCCCG CGATCGACAG CACCTCGACC CGGGTCGAGG TCGATTTCGC CCGTGACTCC
TACATACGCG ACGTCGCGCG CGCGCGCACC TTCGGCTTCA TGCAGGACGT CGAGTTCATG
CAGGCCAACG GGCTGGCGCT CGGCGGCAGC CTGGAGAATG CGATCGTGAT GGACGAGTAC
CGCGTGCTCA ATGCCGAGGG CCTGCGCTAC GCCGACGAGT TCGTCAAACA CAAGGTGCTG
GACGCGATCG GCGACCTCTA CCTGTGCGGC CACCCCTTGC TCGCGTCGTA TTCGGCGCAC
AAGGCCGGCC ATGCGCTCAA CAACCAGATC CTGCGCGTGC TGCTCGAGGA GAAGGAGGCC
TGGGAACTGG TGAGCTTCGA CCAGGAGGCC GCGACCCCGC CCGCGGTCTC GCACCAGTTC
GCGCCGCTCG TAGCCCTCGC ATGA
|
|---|
| Protein sequence | MIRQRTLKSV VTATGVGLHG GRKVTLTLRP AAPDTGIVFH RVDLDPPLTL PADPYAVCDT
RMCSGLEQGG HKVGTVEHLM SALAGLGIDN LHVDVDAPEI PILDGSSAPF VFLLQSAGIE
EQRAAKKFLR VKKAVEYVEG DKWVRLEPYD GFRLAFSIVF NHPAIDSTST RVEVDFARDS
YIRDVARART FGFMQDVEFM QANGLALGGS LENAIVMDEY RVLNAEGLRY ADEFVKHKVL
DAIGDLYLCG HPLLASYSAH KAGHALNNQI LRVLLEEKEA WELVSFDQEA ATPPAVSHQF
APLVALA
|
|---|
| |