Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tmz1t_3409 |
Symbol | secD |
ID | 7873900 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thauera sp. MZ1T |
Kingdom | Bacteria |
Replicon accession | NC_011662 |
Strand | + |
Start bp | 3728469 |
End bp | 3730334 |
Gene Length | 1866 bp |
Protein Length | 621 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 643700349 |
Product | preprotein translocase subunit SecD |
Protein accession | YP_002890380 |
Protein GI | 237654066 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0342] Preprotein translocase subunit SecD |
TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family [TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.768129 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAACCGCT ATCCCCTCTG GAAGAACCTC CTGATCGGCC TCGTGCTGCT CTGGGGCCTG ATCTACACCC TGCCCAACTT CTACGGCGAG GTGCCGGCGG TGCAGGTGTC CAGCGCCAAG GCCACGCTCA AGCTCGACAC CGCGGCCACC ACCGACCGCA TCGCCGGTGC GCTCAAGGCG GCCGGCATCG AGAACACCGG CATCTTCTCC GACGCCACCA GCGTGCGTGC CCGCTTCAAG GACACCGAGA CCCAGCTGCG CGCCAAGGAC GTCATCGAGC AGACCTTCAA CCCCGACGCC GCCGACCCGT CCTACGTGGT CGCGCTCAAC CTGCTGTCGG CCTCGCCGAG CTGGCTCACC TCGATCCAGG CGCTGCCGAT GTATCTCGGC CTCGACCTGC GCGGCGGGGT GCACTTCCTG CTCGAGGTCG ACATGCCGGG TGCGCTGGTC AAGCGCCTCG ATTCGACCAC CGGCGACCTG CGCACCCTGA TGCGCGACAA GAGCGTGCGC CACGCCGGCA TCACCCGCGA AGGCAACACC GTGGTGATCC GCTTCCGCGA CGCCGCCCAG CGCGAGGCGG GCCGGCGCGC GATCTTCGAC AGCACCACCG ACCTGCAGCT CGTCGAGCGC GACGATGCCG CCGACGACCT CAAGCTGGTC GCCACGCTGA CGCCGCAGGC GCAGCAGACC ATGCGCGACT TCGCGATCAA GCAGAACATC ACCACGCTGC ACAACCGCAT CAACGAGCTC GGCGTCGCCG AGCCGGTGAT CCAGCAGCAG GGTGCCGAGC GCATCGTGGT GCAGCTGCCC GGCGTGCAGG ACGTGGCCAA GGCCAAGGAC ATCCTCGGCC GCACCGCCAC GCTGGAAGTG CGCATGGTGG ACGACACCCC GGGCGCGATC GAGCAGGCGC TCGCCGGCAG CGTGCCCTTC GGCACGGAGC TCTACAACGA GCGTGGCGGC TCGCCGCTGC TGGTCAAGAA GCAGGTCGTG CTCACCGGAG ACCGCCTCAC CGACGCCCAG CCCGGCTTCG ACGGCCAGAC CAACGAACCC GCGGTACACC TCACGCTCGA TGCCGCCGGC GCGCGCATCT TCCGCGACGT CACGCGCGAG AGCGTCGGCA AGCGCATGGC CATCCTGCTG TTCGAGAAGG GCAAGGGCGA GGTCGTGACC GCGCCGGTGA TCCGCAGCGA GATCGGCGGC GGGCGCGTGC AGATCTCCGG TCGCATGAGC ACCGTCGAGG CCAACGACGT CGCGCTGCTG CTGCGCGCCG GCTCGCTGGC GGCGCCGATG GAGATCATCG AGGAGCGCAC CGTCGGCCCA AGCCTCGGCG CGGAGAACAT CCAGAAGGGC TTCAACTCGA CGTTGTGGGG CTTCCTCGCG ATCGTCGTGT TCATGTGCGG TTACTACATG CTGGTGGGCC TGGTGTCCTC GATCGCGCTC GCCGCCAACC TGCTGCTGCT GGTGGCGCTG CTGTCGCTGC TGCAGGCCAC GCTGACCCTG CCCGGCATCG CCGCGATGGC GCTGACCCTG GGCATGGCGA TCGACTCCAA CGTGCTGATC AACGAGCGCA TCCGCGAGGA ACTGCGCAAC GGCGCCAGCC CGCAGGCGGC CATCGCGGCC GGTTACGACC GCGCCTGGGA CACCATCCTC GACTCCAACA TCACCACGCT GATCGCGGGC ATCGCGCTGC TGGTGTTCGG CTCCGGTCCG GTGCGCGGCT TCGCGGTGGT GCACTGCCTG GGCATCCTGA CCTCGATGTT CAGCGCGATC CTGGTGTCGC GGATGCTGAT CAATTTCATC TACGGCCGTC GCCGCAAGGT CGAAAGCCTG TCGATCGGCC AGGTGTGGAA GCCGGATACG AAATAA
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Protein sequence | MNRYPLWKNL LIGLVLLWGL IYTLPNFYGE VPAVQVSSAK ATLKLDTAAT TDRIAGALKA AGIENTGIFS DATSVRARFK DTETQLRAKD VIEQTFNPDA ADPSYVVALN LLSASPSWLT SIQALPMYLG LDLRGGVHFL LEVDMPGALV KRLDSTTGDL RTLMRDKSVR HAGITREGNT VVIRFRDAAQ REAGRRAIFD STTDLQLVER DDAADDLKLV ATLTPQAQQT MRDFAIKQNI TTLHNRINEL GVAEPVIQQQ GAERIVVQLP GVQDVAKAKD ILGRTATLEV RMVDDTPGAI EQALAGSVPF GTELYNERGG SPLLVKKQVV LTGDRLTDAQ PGFDGQTNEP AVHLTLDAAG ARIFRDVTRE SVGKRMAILL FEKGKGEVVT APVIRSEIGG GRVQISGRMS TVEANDVALL LRAGSLAAPM EIIEERTVGP SLGAENIQKG FNSTLWGFLA IVVFMCGYYM LVGLVSSIAL AANLLLLVAL LSLLQATLTL PGIAAMALTL GMAIDSNVLI NERIREELRN GASPQAAIAA GYDRAWDTIL DSNITTLIAG IALLVFGSGP VRGFAVVHCL GILTSMFSAI LVSRMLINFI YGRRRKVESL SIGQVWKPDT K
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