| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmz1t_3378 |
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| Symbol | |
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| ID | 7873869 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thauera sp. MZ1T |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011662 |
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| Strand | - |
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| Start bp | 3694096 |
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| End bp | 3697263 |
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| Gene Length | 3168 bp |
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| Protein Length | 1055 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 643700315 |
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| Product | ribonuclease R |
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| Protein accession | YP_002890349 |
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| Protein GI | 237654035 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACTCGCA AAACGAAAAA AACCGATCAG CAGCGCTCCG GCGCCCCCTC CCGCAGAACG
CCGGCCGCGC CGCAGCAGGG CGAGCTTGCG CCGCGCGCCA ACCCGCCCGG GCGCAAGGCC
GGGCGCGGCA CACTTGCCGT GCACGCCGCG CCCGAACCCG CCGCCCAAGG CAGCACTCGG
CACACCGGCT CCCCGGCGCG CGGCCCTGGC CGCAGTCGGG CCGCGCGCAA GGCGGCAGCC
GTGCAGGCCA GCGCCGTCCG TCTCGCCGAC CCCTTCTACG AGCGTGAGAC GCAGCAGTAC
GACAACCCGC TCCCCAGCCG CGAATACGTG CTGCAGATCC TCGCCGAGCG CGGCGTGCCG
ATGCCCCTCG CCGAGCTCGC CGGCGCGCTC GACATCGCCC CGCACGAGCT CGACTTCTTC
GACCGTCGCC TGCGCGCGAT GGAGCGCGAC GGCCAGGTCG TGCGCAACCG CCGCGACGCC
TACCTGCTGC CGGCCAAGGC CGACCTCATC AAGGGGCGCG TCGAGGGCCA CCCCGACGGC
TTCGGCTTCC TGCGCCGCGA CGACGGCGAG CCCGACGTCT TTCTCGGTCC CAAGGAGATG
CGCGAGGTGC TGCACGGCGA CCGCGTCATG GTGCGCATCT CCGGCACGGA CCGCCGCGGC
CGTCCCGAGG GCAAGCTGGT CGAGGTGCTC GAGCGCGCCA ACTCCCGCGT CGTCGGTCGT
GTCATCAACG AGCACGGCGT GATGATCGTC GTGCCCGAGA ACCGCCGCCT GGCGCAGGAC
ATCCTGGTCG CCCCGGGCGG GCGCAAGAAG CCCGAGCCAG GCCAGATCGT CACCGTCGAG
CTGGTCGAGC AGCCCACCAA GTTCGCCCAG CCGATCGGGC GCATCGTCGA GGTGCTGGGC
AACTACGCCG ACCCCGGCAT GGAGATCGAG ATCGCGCTGC GCAAGCACGA CCTGCCCTTC
GAGTTCTCCT CCGAGGCCAA GGCGCAGACG CGCAAGCTGC CCGACGTGGT GCGCAAGAAG
GACTGGGCCG GCCGCGAGGA CCTCACCAAG TTGCCGTTGG TCACCATCGA CGGCGAGACC
GCCAAGGACT TCGACGACGC GGTGTATTGC GAGCGCCAGG GCAAGGGTTA CCGCCTCATC
GTCGCCATCG CCGACGTCTC GCACTACGTC GATGCCGCCA GCGCGCTCGA CAAGGATGCC
TTCGATCGCG GCAACTCGGT GTACTTCCCG CGCCGCGTCA TCCCGATGCT GCCCGAGAAG
CTCTCCAACG GCCTGTGCTC GCTCAACCCG CAGGTCGAGC GCCTGGCCAT GGTCGCCGAC
ATGAACATCG CGGCCACCGG CGAGATCAGG AACTACCGCT TCTACCCCGC GGTGATCTGG
TCGCACGCGC GCCTGACCTA CACGAAGGTT GCGGCGGCCC TGTACGACAA GGACCCGGCC
GTGCGCGCCG AACTCGCCGC GCTGCTCCCC CACCTCGAGC AGCTCGACCA GCTCTTCCGC
GTGCTGCTCA AGGCGCGCGC GAAGCGCGGC GCGATTGACT TCGAGACCAC CGAGACGCGC
ATGATCTTCG ACGATAACGG CAAGATCGCG CAGATCGTCC CCGAGGTGCG CAACGATGCC
CACCGCCTGA TCGAGGAGTG CATGCTCGCC GCCAACGTGT GCGCCTCCGA CTTCCTCGCC
ACGCGCGAGC ACCCGGCGTT GTACCGCGTC CACGACTCGC CCTCCGAGGA CAAGCTCGCC
AAGCTGCGCG AGTTCCTCAA GGAGTTCGGC CTCGGCCTCG GCGGCGGCGA CGAGCCGCGC
GCCGCCGACT TCGCCAGGCT GCTCGAGCAG GTCAAGGACC GCCCCGACGC CCAATTGTTG
CAGACCGTCA TGCTGCGTTC GCTCAAGCAG GCGATGTACA GCCCGGACAA CGTCGGCCAC
TTCGGCCTCG CCTACGAGTC CTATACCCAC TTCACCTCAC CGATCCGGCG CTATCCCGAC
CTGCTGATCC ACCGCGGCAT CAAGGCCGCG CTCGCCGGCG AGCAGTACCG CCCCGGCGAC
TGGGAGCAGA TCGGCCTGCA CTGCTCGATG ACCGAGCGCC GCGCCGACGA CGCCACCCGC
GACGTGGTCG CCTTCCTCAA GTGCTACTTC ATGCAGGACC GCGTCGGCGA GGAGTTCGTT
GGCAGCGTGT CGGCGGTGGT GCCTTTCGGT CTCTTCGTGG CGCTCGACGA CATCTTCATC
GAGGGGCTGC TGCACATCTC CGACCTCGGC AGCGATTACT TCCACTACGA CGAGACCCGC
CATGCGCTCA TGGGTGAGCG CACCGGCAAG CAGTTCCGCC TGTCCGACCG GGTCAAGGTG
CAGCTCGTGC GGGTGGATAT GGCCACCAAC AAGATCGACT TCCGCCTCAT CGAGGGGCCG
CTCCCGGTCG AGGCCAAAGC CCCGCCGAAG GTCGCCGAAG TGGTGGCCGC GGAGGTCGTG
CCCGTGGAAG GGAAGAGGGC GCGCAAGCCG CGCAGCAAGA AGGCTGAGGT GGAGGAGAGG
GTCGAGGCCA CACCTGCGCC GGTGGTCGAG GCTGTGCCTG CCGCAGCGGA GCCCGCCGCG
CCCAAGGTGC GCGGCAAGCG GACGAAGAAG GCCGCACCCG AAGCGCTTGC GGAGGTGCCC
GTCGCGCCGG CGGTCGAGTC CACGGCTGCC GCAGCGGAGC CCGCCGCGCC CAAGGCGCGC
GGCAAGCGGG CGAAGAAGGC TGCGCCCGAA GTGGTCGCGG AGGTGCTCGT CGCACCGGTG
GGCGAGTCTG TGACTGCTGC CGAGGCGTCG GCGACGCCCA AGGCGCGCGG CAAGCGCGCG
AAGAAGGTGG TCGCCGGGCA GGTGGCCGAG GTCGTGGCTG CGCCGGCGAT CGAGCCTGTG
CCCGCCGCCG CGGAACCTGT CGCGCCCAAG GCGCGCGGCA AGCGTGCGAA GAAGGCTGCG
ATCGCAACGG TCGCCGAGGT CGTCGTCGCA CCGGTGCTCG AGGTTACGCC GGATGCGGCT
CCGCCCGCCG CGCCCAAGAC ACGCGGCAAG CGCGCGAAGA AGGCCGTCGC CGGCACCGCG
ACCGAAGTCC CCGCCGCGTC CGCCGCCGAG GCGCTAGAAT CCGCGCCCCC GGTACCGGCC
CGACGTGCCG GCCGCAAGAC CACCACAAAG GGCTCCGACC GTGGCTAA
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| Protein sequence | MTRKTKKTDQ QRSGAPSRRT PAAPQQGELA PRANPPGRKA GRGTLAVHAA PEPAAQGSTR
HTGSPARGPG RSRAARKAAA VQASAVRLAD PFYERETQQY DNPLPSREYV LQILAERGVP
MPLAELAGAL DIAPHELDFF DRRLRAMERD GQVVRNRRDA YLLPAKADLI KGRVEGHPDG
FGFLRRDDGE PDVFLGPKEM REVLHGDRVM VRISGTDRRG RPEGKLVEVL ERANSRVVGR
VINEHGVMIV VPENRRLAQD ILVAPGGRKK PEPGQIVTVE LVEQPTKFAQ PIGRIVEVLG
NYADPGMEIE IALRKHDLPF EFSSEAKAQT RKLPDVVRKK DWAGREDLTK LPLVTIDGET
AKDFDDAVYC ERQGKGYRLI VAIADVSHYV DAASALDKDA FDRGNSVYFP RRVIPMLPEK
LSNGLCSLNP QVERLAMVAD MNIAATGEIR NYRFYPAVIW SHARLTYTKV AAALYDKDPA
VRAELAALLP HLEQLDQLFR VLLKARAKRG AIDFETTETR MIFDDNGKIA QIVPEVRNDA
HRLIEECMLA ANVCASDFLA TREHPALYRV HDSPSEDKLA KLREFLKEFG LGLGGGDEPR
AADFARLLEQ VKDRPDAQLL QTVMLRSLKQ AMYSPDNVGH FGLAYESYTH FTSPIRRYPD
LLIHRGIKAA LAGEQYRPGD WEQIGLHCSM TERRADDATR DVVAFLKCYF MQDRVGEEFV
GSVSAVVPFG LFVALDDIFI EGLLHISDLG SDYFHYDETR HALMGERTGK QFRLSDRVKV
QLVRVDMATN KIDFRLIEGP LPVEAKAPPK VAEVVAAEVV PVEGKRARKP RSKKAEVEER
VEATPAPVVE AVPAAAEPAA PKVRGKRTKK AAPEALAEVP VAPAVESTAA AAEPAAPKAR
GKRAKKAAPE VVAEVLVAPV GESVTAAEAS ATPKARGKRA KKVVAGQVAE VVAAPAIEPV
PAAAEPVAPK ARGKRAKKAA IATVAEVVVA PVLEVTPDAA PPAAPKTRGK RAKKAVAGTA
TEVPAASAAE ALESAPPVPA RRAGRKTTTK GSDRG
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