| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmz1t_3276 |
|---|
| Symbol | |
|---|
| ID | 7874497 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thauera sp. MZ1T |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011662 |
|---|
| Strand | - |
|---|
| Start bp | 3590524 |
|---|
| End bp | 3591363 |
|---|
| Gene Length | 840 bp |
|---|
| Protein Length | 279 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 643700210 |
|---|
| Product | polysaccharide deactylase family protein, PEP-CTERM locus subfamily |
|---|
| Protein accession | YP_002890248 |
|---|
| Protein GI | 237653934 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0726] Predicted xylanase/chitin deacetylase |
|---|
| TIGRFAM ID | [TIGR03006] polysaccharide deactylase family protein, PEP-CTERM locus subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.231611 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGCCGCAC GCATCACCAA CGCCTTCACC TGCGACGTTG AGGACTACTT CCAGGTCTCC
GCGCTCGCGC CGCATTTTCC GCGCGAGCAG TGGGACAGCG TGCCCTGCCG CGTCGAGCGC
AACGTCGATC GCATCCTCGC GCTGCTCGAC GGCCACGGCG CGCGCGGCAC CTTCTTCACC
CTGGGCTGGC TCGCCGAGCG CTATCCCGGC CTGGTGCGCC GCATCGCCGC CGCGGGCCAC
GAGGTGGCGA GCCACGGCTA CGCGCACCAG CGCGCGAGCG ACCTCACGCC CCAAGCCTTC
ACGGCCGACA TCCGCCTGGC CAAGGTGATC CTCGAGGACA TCACCGGTAG TGTGGTGACC
GGCTACCGCG CGCCCAGCTT CTCGATCGGC GAGGCCAACC TGTGGGCGCA CGACTGCATC
GCCGAGGCGG GCTACCGCTA CAGCTCGAGC GTGTATCCGG TCCGCCACGA CCACTACGGC
ATCCCCGACG CGCCGCGCTT CCCGTGGCGC CTGCCCAACG GCCTGGTCGA GGTGCCGATC
ACCACCGTGC ACATGCTTGG ACGCAACTGG CCCGCGGGTG GCGGCGGTTT CTTCCGCCTG
CTGCCCTATG CGCTGTCGCG CTGGCAGATC GCGCGCGTCA ACGCTGCCGA CCGTCGCCCG
GCGATCTTCT ACTTCCACCC CTGGGAAATC GATCCCGAAC AGCCGCGCGT GACCGCTGCC
ACGGCAAAGA CCCGGTTCAG GCACTACATT AACCTCCAGC ACACCGAAGC CCGGCTCGAC
CGGCTTCTCT CCGATTTCTC CTGGGGGCGC GCCGACGAAG TCTTCCGCGA CGCCGCCTGA
|
|---|
| Protein sequence | MAARITNAFT CDVEDYFQVS ALAPHFPREQ WDSVPCRVER NVDRILALLD GHGARGTFFT
LGWLAERYPG LVRRIAAAGH EVASHGYAHQ RASDLTPQAF TADIRLAKVI LEDITGSVVT
GYRAPSFSIG EANLWAHDCI AEAGYRYSSS VYPVRHDHYG IPDAPRFPWR LPNGLVEVPI
TTVHMLGRNW PAGGGGFFRL LPYALSRWQI ARVNAADRRP AIFYFHPWEI DPEQPRVTAA
TAKTRFRHYI NLQHTEARLD RLLSDFSWGR ADEVFRDAA
|
|---|
| |