| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmz1t_3004 |
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| Symbol | rumA |
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| ID | 7874393 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thauera sp. MZ1T |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011662 |
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| Strand | - |
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| Start bp | 3254925 |
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| End bp | 3256250 |
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| Gene Length | 1326 bp |
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| Protein Length | 441 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 643699925 |
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| Product | 23S rRNA 5-methyluridine methyltransferase |
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| Protein accession | YP_002889979 |
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| Protein GI | 237653665 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
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| TIGRFAM ID | [TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.202299 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCGACAG CCAAGATCGA TTCCCTGGAC CACGAAGGCC GTGGCGTGAC CCGCGTCGAG
GGCAAGGCGG TATTCGTCGA GGGCGCCCTG CCGGGCGAGC GCGTCGAATA CGTCGTGCGG
CGTGCCAAAC CGAGTTACGA GCAGGGTGAG GTGGTGCGCG TGCTGCGCCC GAGCGCGCAG
CGCGTGGCGC CGCGCTGCCC GCATTACGGC GTGTGTGGTG GCTGCTCCAT GCAACATCTG
GATGCGGATG CGCAGGCCGC GGTGAAGCAG CGCCTCCTCG AGGACGCGCT GCGCCACATC
GGCAAGCTGC ACGCCGACCG CATCCTGCCG GCGATCCACG GTCCCGCCTG GGGCTACCGC
TACCGCGCGC GCCTGGGCGT GCGCCTGGTG CCGAGCAAGG GTGGGCTGCG CGTGGGTTTT
CACGAGCGCC GCTCGAGCTA CATCGTCGAC ATGCGCACCT GCCCGGTGCT GCCGCCGGCG
ATCTCGGCGC TGCTGCCGCG CCTGCGCACG ATGCTGGCCG GGCTGTCGAT CGCGGATCGC
CTGCCTCAGG TCGAGATCGC GGTGGGCGAG GACAGCACCG TGTTCGTGTT TCGCAACCTG
CTGCCGTTCT CCGCGGCGGA CGAGAAGCAG CTCGCCGCCT TCGCCGATGC CGAGGGCATC
CAGGCCTGGG TCCAGCCCGC GGGCCCCGAT TCGGCGCGGC CTCTGCACCC GGCGAACGCG
CAGCTACCGT TCTACACCTT GCCCGAGTTC GGCCTGCGGC TGGATTTCCG CCCTACCGAC
TTCACCCAGG TGAACGCAGA CATCAATCGA CTGCTGATCC GGCGTTCGAT GCAACTGCTC
GACCCGCGCC CGGGCGAGCG TATCGCAGAC CTGTTCTGCG GGCTGGGAAA CTTCAGCCTG
CCGATCGCGC GCCTCGGCGC CGAGGTGGTG GGTGTGGAGG GCAGCGAGGC CCTGGTCGAG
CGCGCCCATG CCAACGCGGC GCGCAATGGG CTCGCGGCGC GCTGTGAGTT CCACGCCGCG
AATCTGTTCG AGACCACCGA GGACAGCCTG GCCGCGCTCG GCCGGCTGGA CAAGCTGTTG
ATCGATCCGC CGCGCGAGGG CGCGATCGCG GTGGTGAAGG CGATCGACCC GTCACGCGGG
CCATCGCGGA TCGTGTATGT GTCGTGCAAC CCGGCGACCC TGGCGCGCGA CGCCGCGGTG
CTGGTGCACG AGAAGGGCTA TCGGCTCGCC GCGGCGGGGA TCGCCAACAT GTTCCCGCAG
ACCTCGCACG TCGAGTCCGT GGCGCTCTTC GAGCGCACCC CGGGGACTGA AGTCGGGCCG
GGCTGA
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| Protein sequence | MPTAKIDSLD HEGRGVTRVE GKAVFVEGAL PGERVEYVVR RAKPSYEQGE VVRVLRPSAQ
RVAPRCPHYG VCGGCSMQHL DADAQAAVKQ RLLEDALRHI GKLHADRILP AIHGPAWGYR
YRARLGVRLV PSKGGLRVGF HERRSSYIVD MRTCPVLPPA ISALLPRLRT MLAGLSIADR
LPQVEIAVGE DSTVFVFRNL LPFSAADEKQ LAAFADAEGI QAWVQPAGPD SARPLHPANA
QLPFYTLPEF GLRLDFRPTD FTQVNADINR LLIRRSMQLL DPRPGERIAD LFCGLGNFSL
PIARLGAEVV GVEGSEALVE RAHANAARNG LAARCEFHAA NLFETTEDSL AALGRLDKLL
IDPPREGAIA VVKAIDPSRG PSRIVYVSCN PATLARDAAV LVHEKGYRLA AAGIANMFPQ
TSHVESVALF ERTPGTEVGP G
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