| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmz1t_2928 |
|---|
| Symbol | |
|---|
| ID | 7873830 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thauera sp. MZ1T |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011662 |
|---|
| Strand | + |
|---|
| Start bp | 3166759 |
|---|
| End bp | 3168747 |
|---|
| Gene Length | 1989 bp |
|---|
| Protein Length | 662 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 643699849 |
|---|
| Product | DNA topoisomerase IV subunit B |
|---|
| Protein accession | YP_002889904 |
|---|
| Protein GI | 237653590 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0187] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit |
|---|
| TIGRFAM ID | [TIGR01055] DNA topoisomerase IV, B subunit, proteobacterial |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGGCA CGCAAGGCAC TCCAAAGCAG TACGACGAAT CCTCCTTCCG CGTCCTGAAA
GGGCTCGAGC CGGTGCGCGA ACGCCCCGGC ATGTACACCC GCACCGACAG CCCGGCGCAC
ATCATCCAGG AGGTGATCGA CAACGCCGCC GACGAGGCGC TCGGCGGCTT CGCGAAAAAG
ATCCACGTCA CGCTCCATGT CGACGGCTCG GTCACCGTGG CCGACGATGG CCGCGGCATC
CCGGTCGGAC TGCACCCCGA GGAAGGCGTC CCGGTGGTGG TGCTGGCCTA CACCCGGCTG
CACGCCGGCG GCAAGTTCGA CAAGCGCGAG GGCAACTCGG CCTATGCCTT CTCGGGCGGC
CTGCACGGCG TCGGCGTGTC GGTGACCAAC GCGCTGTCGA CCCGGATCGA GGTCGAGGTC
AGGCGCGAGG GCAAGATCCA CCGCATCGAC TTCTCCGACG GCGGCGAGAC GATCGGCCCG
GTGCGCGTCG AGGGCGACTG CGGACGCCAG ACCGGCACCC GGGTGCGGGT GTGGCCGGAC
GGCAAGTACT TCGAATCTCC GCGCGTGCCG ATGAACGAGC TCGAGCGCCT GCTGCGCTCG
AAAGCGGTGC TGCTGTCGGG GGTCGCGGTG CGGCTCGACA TCGAGCAGGC GAACGGCCCG
GCGCTGACCA AGACGTGGTC CTACCCCGAC GGCCTCGCCG GTTATCTGAA AGAGCTCGCG
GGCGATGTCG AGCCGGTGGC GCCGATCTTC ACCGCCGAGA AATACGCCGC CAAGGACGAT
CCGACCTTCG CCGCCGGTGA AGGCGCGGCG TGGGCGCTGG CATGGTTCGA ATCCCCGGTG
CCGAGCGAGT CCTACGTCAA CCTGATCCCG ACCGTGAACG GCGGCACCCA CGAATCCGGC
CTGCGCGCCG GCGTGTTCGA GGCGATGAAG TCCTTCATCG ACCACCACAC CCTGCTGCCG
CGCGGCGTGA AGCTGCAGCA GGAGGACGTG TGCGGGCGCA TGAGCTTCGT GCTCTCGGCG
CGCCTGCTCG ACCCGCAGTT CCAGGGCCAG GTGAAGGAAA AGCTCAACTC GCGCGAGGCG
GTCAAGCTCG TCTCCAGCCA GCTGCGCGAC CCCTTCGAGA TCTGGCTCAA CAACCACGTC
GAGGCCGGCC GCGCGATCGC CGAGCTTTCC ATCAAGCAGG CGCTTGCGCG CCAGAAGAGC
GCGCAGAAGG TCGAGAAGAA GAAGACCTCG GGCGTGGCGG TGCTGCCCGG CAAGCTGTCG
GACTGCGAGT CCGAGGACCT CGCCGACAAC GAGCTCTTCC TGGTCGAGGG CGACTCCGCC
GGCGGCTCGG CCAAGATGGC GCGCAACAAG GAGACCCAGG CCATCCTGCC CTTGCGCGGC
AAGGTGCAGA ACGCCTGGGA GATCGACCCG GATCGCCTCT TCGCCAACGC CGAGATCCAC
GACATCGCGG TGGCCCTCGG CGTGGACGCG CACACCGCCG ACAGCCCGAT CGACCTCTCC
GGGCTGCGCT ACGGCAAGGT CGTCATCATG TCCGACGCCG ACGTCGACGG CGCCCACATC
CAGACCCTGC TGCTGACGCT GTTCTTCCGC CACTTCCCCA AGCTCATCGA GCGCGGCCAC
GTGTATGTGG CGCAGCCGCC CCTGTACCGC ATCGATGTCC CGGCACAAGG CAAGAAGCGC
CCGCCGCGCC GCCTCTACGC GCTCGACGAG GGCGAGCTCG CCGCGATGCG CGAGCGCCTG
GAGAAGGAAG GCTTCAAGCC CGACGCGATC GAGATCGGCC GCTTCAAGGG CCTGGGCGAG
ATGAACCCCG ACCAGCTGCG CGAGACCACC ATGGACCCGG CCACCCGTCG GGTGCTGCCG
GTGAAGGTGC GCAGCGGCGC GCTGCAGGAC ACGCTGAAGA TGTTCACCCT GCTGATGGGC
AAGGGCGAAG CCTCGGGGCG GCGTGCGTGG ATGGAAGAAA AGGGCGACAG CGTCGAGGCG
GATGTCTGA
|
|---|
| Protein sequence | MAGTQGTPKQ YDESSFRVLK GLEPVRERPG MYTRTDSPAH IIQEVIDNAA DEALGGFAKK
IHVTLHVDGS VTVADDGRGI PVGLHPEEGV PVVVLAYTRL HAGGKFDKRE GNSAYAFSGG
LHGVGVSVTN ALSTRIEVEV RREGKIHRID FSDGGETIGP VRVEGDCGRQ TGTRVRVWPD
GKYFESPRVP MNELERLLRS KAVLLSGVAV RLDIEQANGP ALTKTWSYPD GLAGYLKELA
GDVEPVAPIF TAEKYAAKDD PTFAAGEGAA WALAWFESPV PSESYVNLIP TVNGGTHESG
LRAGVFEAMK SFIDHHTLLP RGVKLQQEDV CGRMSFVLSA RLLDPQFQGQ VKEKLNSREA
VKLVSSQLRD PFEIWLNNHV EAGRAIAELS IKQALARQKS AQKVEKKKTS GVAVLPGKLS
DCESEDLADN ELFLVEGDSA GGSAKMARNK ETQAILPLRG KVQNAWEIDP DRLFANAEIH
DIAVALGVDA HTADSPIDLS GLRYGKVVIM SDADVDGAHI QTLLLTLFFR HFPKLIERGH
VYVAQPPLYR IDVPAQGKKR PPRRLYALDE GELAAMRERL EKEGFKPDAI EIGRFKGLGE
MNPDQLRETT MDPATRRVLP VKVRSGALQD TLKMFTLLMG KGEASGRRAW MEEKGDSVEA
DV
|
|---|
| |