| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmz1t_2832 |
|---|
| Symbol | |
|---|
| ID | 7873240 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thauera sp. MZ1T |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011662 |
|---|
| Strand | - |
|---|
| Start bp | 3068402 |
|---|
| End bp | 3070540 |
|---|
| Gene Length | 2139 bp |
|---|
| Protein Length | 712 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 643699753 |
|---|
| Product | putative PAS/PAC sensor protein |
|---|
| Protein accession | YP_002889808 |
|---|
| Protein GI | 237653494 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2202] FOG: PAS/PAC domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.420682 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGCCGA GCACAGCCGA CATCGCCGCA GCCTCCGCCA TGGAATATCG GCGCGCCGGG
CGGCCGGCGT CGTGGCCGCG CGCCGCGAGC GCGCCGCCCA TCTCCCTGCG TCACATCCTC
GCCGCGCTGT GGCTGGCGCT GATTCCCTCC ACCTTGTTCG CACAGGTGCC CGATTTCCGC
CAGGTGTTCG ACGATCACGG CGTCGTGATG CTGCTGATCG ACCCGGCCTC CGGGCAGATC
GTCGATGCCA ACCCGGCCGC GGCGGACTTC TATGGTTACG GACGCGATGC GCTGCGGTCC
ATGACCATCG CGCAGATCAA CTCCTTCAGC GCGGAGCTGT TGGCGGCCGA GCGCGCCCTT
GCCGAAAAGG AAAACCGCAA CTACTTCATC TTCCGCCATC GACTGGCGAG TGGCGAGCTC
CGTACCGTCG AGGTGTATTC CCATCCTTTC GAATTCGATG GACGTCCCCT GCTGCTGTCG
ATGATTCATG ACATCACCCC CGGACGCAGT CTCGAAGAGG GGATGTGGCA CTACCAGCAG
CGGCTGGAAG AGTTGGTGGC GGCGCGCACG GCCGAGGCCG AAGCGCGCCA TCGTGCCGTT
ATCGCGCTGC TGGCAGGATT GTCGGTCGCC GCGGTGCTGA CCCTGGTCCT TGTCCTGGCC
ATTCGCCGGA TCAAGCGCGC CGAGGCGGAA TTGCGCGAGA GCGACGCCCT CTACCGCCAT
CTCTTTCATG CGAACCCGAA CCCCATGTGG GTCTTTGAGC TCGCGACACT GCGCTTCCTG
GCCGTGAACG ATGCGGCAGT CAGCCACTAC GGCTATTCGC GGGACGAATT CCTCTCCATG
ACGATCAAGG ACATTCGCCC GCCCGAGGAT CTGCCGCGCC TTTACGAGAA TCTGGGCGAG
TTGCCCGCAG GGGGCCTCGA TCAGGCGGGC GTCTGGCGGC ACTTGAAGAA AGACGGCAGT
GTGATCGAAG TCGAGATCAC CTCGCACGTG CTGGAGTTCG ACAGACGGGA GTGCGAACTG
GTGCTGGCGC ACGACATCAC GGCGCGTCGG CAGGCGGAGG AGCGCTTGCG CGAGAGCGAG
GAACGCCTGC GTCTGTCCAC CGAGCTGGCC CAGGTAGCCG TTTGGGACTA TCGCGTGCCG
ACCGACCGCA TGTCGCGCTC GAAGAACCAC GACTCCCTCT ACGGACTGCC CTGGCAGGAC
GACTGGGAGT TCGGCACCTT CCTCGACGTA ATCCACCCCG ACGACCGCCC ACGCGCGCGC
GAGACGATCC GGCAGTCGTT AGCGCCCGGC GGCCCCGACC ACTATGCGTT CGATTTTCGT
GTCATCCACC CCGACCAGAG CATCCATTGG CTGAGTGTGG TCGGTCAGGT GGTCGAGCGC
GGTCCGGACG GGAGCGGCAT GACGGTTCGC GGCACCTTGA CGGACGTCAC CGAGCGCAAG
AGGGGCGAGC TTGCGCTTGC GCTCGCAGCC CGCCGTGACC AAGCCCTGCT GAACCTCCCG
GAGGCCGCCG AGGCGCTCGA CGAAGCCGCG TTCATGCAGC GTGGGCAGGA ACTCGCCGAG
GAACTGACCG GTAGCCGGAT CGCCGTCATC CATCTCGTCG ACGACGACCA GGAGACCATC
GAGCGGGTCA CCTGGCCGCG TGCCACGCTG GAACAGGATT GCCGGGCCAC CCGCGACAAG
CATTGCCCGG TCAGCCAGGC CGGCGTCTGG GCGGATGCCC TGCGTCTTCG CGCGCCCGTG
GTTTTCAACG ACTACGCCAA TGCGCCCGAC AAGCATGGAT TGCCGCAAGG CGATGCGGGC
CTGGAGAGGC TGATCAGCGT GCCGGTGATC GAAGACGGGC GGGTACGCAT GCTTACGGGG
GTCGGCAACA AGCCCGAGCC TTATTCGGGC GCCGACGTGG AAACGGTTCG TCTGCTCGGT
GAATCCATCT GGCGCATCGT CAGCAAGAAG CGCCAGCAAG CCGAACTTCG GCAAAAGCTC
GCCGAACTGC AGCAGTGGTA CGAGGTGATG CTGGGCCGCG AGGGGCGCAT CCTCGAACTC
AAGCGCGAGG CTGACGCCCT GCGCCAGCGG CTGGATGAAC CGCGGCGCTA TGCCGAGGAC
CTGGCAGATC TTCCGCAAGA GGGCGGGATC GCCGAATGA
|
|---|
| Protein sequence | MTPSTADIAA ASAMEYRRAG RPASWPRAAS APPISLRHIL AALWLALIPS TLFAQVPDFR
QVFDDHGVVM LLIDPASGQI VDANPAAADF YGYGRDALRS MTIAQINSFS AELLAAERAL
AEKENRNYFI FRHRLASGEL RTVEVYSHPF EFDGRPLLLS MIHDITPGRS LEEGMWHYQQ
RLEELVAART AEAEARHRAV IALLAGLSVA AVLTLVLVLA IRRIKRAEAE LRESDALYRH
LFHANPNPMW VFELATLRFL AVNDAAVSHY GYSRDEFLSM TIKDIRPPED LPRLYENLGE
LPAGGLDQAG VWRHLKKDGS VIEVEITSHV LEFDRRECEL VLAHDITARR QAEERLRESE
ERLRLSTELA QVAVWDYRVP TDRMSRSKNH DSLYGLPWQD DWEFGTFLDV IHPDDRPRAR
ETIRQSLAPG GPDHYAFDFR VIHPDQSIHW LSVVGQVVER GPDGSGMTVR GTLTDVTERK
RGELALALAA RRDQALLNLP EAAEALDEAA FMQRGQELAE ELTGSRIAVI HLVDDDQETI
ERVTWPRATL EQDCRATRDK HCPVSQAGVW ADALRLRAPV VFNDYANAPD KHGLPQGDAG
LERLISVPVI EDGRVRMLTG VGNKPEPYSG ADVETVRLLG ESIWRIVSKK RQQAELRQKL
AELQQWYEVM LGREGRILEL KREADALRQR LDEPRRYAED LADLPQEGGI AE
|
|---|
| |