Gene Tmz1t_2782 details

Gene Information

• Locus tag: Tmz1t_2782
• ID: 7873398
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Thauera sp. MZ1T
• Kingdom: Bacteria
• Replicon accession: NC_011662
• Strand: +
• Start bp: 3011855
• End bp: 3012373
• Gene Length: 519 bp
• Protein Length: 172 aa
• Translation table: 11
• GC content: 68%
• IMG OID: 643699704
• Product: 16S rRNA processing protein RimM
• Protein accession: YP_002889759
• Protein GI: 237653445
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0806] RimM protein, required for 16S rRNA processing
• TIGRFAM ID: [TIGR02273] 16S rRNA processing protein RimM

Plasmid Coverage information

• Num covering plasmid clones: 29
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATCGTAC TGGGGCGCAT CGTCGCCCCT TTTGGCGTTC AGGGCTGGAT CAAGATCCAT 
CCCTTCGGTG ACGACCCCGC CTCGTGGCGG AATATGTCGC ACTGGTGGCT GTGCAGCGAC 
GACGACGCGC CCGCCGAGGC GTGGAAGCAA TACACGTTGA GCGCCTGCCG GCCGCACGGC 
AAGGGGCTGG TGGCCGCACT GGCCGAGATA TCCGACCGGG GCGCCGCCGA GGCGATCGAC 
GGCTTCTACA TCGCCGCGCC GCGCGAGGCG CTGCCCAAGC CTGCCGAGGG CGAGTACTAC 
TGGGGCGACC TCGTCGGCCT GGCGGTCGAG AACGAGGCGG GTGAAGCGAT GGGCACGGTC 
GCAGGGTTGA TCTCGACCGG CGCGCACGAC GTGTTGCAGG TGCGTGAAGG CGAAGGTGAA 
GAGGGGGTCG AACGCCTGAT CCCCTTCGTC GCCGCCTACG TGCTCGACGT CGACCTGGCC 
ACGCGGCGCA TCCGGGTCGC CTGGCAGAAA GACTGGTAA 

 

Protein sequence

MIVLGRIVAP FGVQGWIKIH PFGDDPASWR NMSHWWLCSD DDAPAEAWKQ YTLSACRPHG 
KGLVAALAEI SDRGAAEAID GFYIAAPREA LPKPAEGEYY WGDLVGLAVE NEAGEAMGTV 
AGLISTGAHD VLQVREGEGE EGVERLIPFV AAYVLDVDLA TRRIRVAWQK DW