| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmz1t_2715 |
|---|
| Symbol | |
|---|
| ID | 7873457 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thauera sp. MZ1T |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011662 |
|---|
| Strand | - |
|---|
| Start bp | 2945982 |
|---|
| End bp | 2947082 |
|---|
| Gene Length | 1101 bp |
|---|
| Protein Length | 366 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 643699639 |
|---|
| Product | efflux transporter, RND family, MFP subunit |
|---|
| Protein accession | YP_002889694 |
|---|
| Protein GI | 237653380 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.37732 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGCATTC AAAAATCAGT TTTCGCGCTG ACTACCGCGC TGCTTTGCCT GTCGTTGGCC
GCCTGCAGCG AGCGGCCCGC GCCCGTTGCG GCGGTGGAGG CGACGCGTCC GGCGCCGATT
CTCACCGTCG GACGGCGCAC GGCGGACGAG GCCTTGCGCC TGCCGGGGCG GGTGCGTGCA
GCCAGGCGCG CCGAGTTGTC GTTCGACGTG CCCGGCTTCG TCGACTCCTT CAGCCTGGAG
GAGGGGCGGC GGGTGAAGGC TGGGGAGGTG GTCGCGCGCC TTGACGACCG CATCTACCGC
TCGCGTCTGG ACGCCGCGCG TGCGGAGTTC GAGCGTGCGC GGAACGATCT CGCGCGCTAT
CAGCGCCTGT GGGAAAGCGA GCAGGCGGTC GCCCGCGCCG AGGTCGACGA CCGCCGCGCC
CGCCTCGAAG CCGCGCGCAC CAGCCTCGCC GCCGCCGAGC GCGATCTCGC CGACACTGCG
ATCAAGGCGC CTTTCGAGGG CGTGATCACC CGCCGCCGCA TCGAGCCCTT CACCAATGTG
CAGGCCAAGC AGCCGATCGC CGAGCTGCAG GACCTGCGCG CGCTCGAGGT CGTGGTGAAT
GTGCCCGAGC GTCTGGTGCG CCGCATGCGG CCGCAGCAAG CTGCGGTCGC ATTTCTCGAG
GGCGAGCGCA GCGTGGAGGG CGACCGCGCC GCGCCGGGGC AGGTGCTGAG GCTCGAGCTG
CAGTCCTTCG CCGCCGAGGC CGACGCGCTG ACGCAGACCT ATGCGGTGGT GCTCGCGGTG
CGCTCGGTGC CTGCCGGCGT CAACCTGCTG CCGGGGATGG CGGTGAGCCT GGAACCGGCG
GCGGACGCCG GCGGGGCGCC CGCGGCGGAC GCCGCCATCA CCGTCCCGCT CGCCGCCGTG
GCCGCCGACG CGCAGGGCCG GCCGGGCGTG TGGGTCGTCG GCGACGACGA GCGGGTCGCG
CGCCGCCCGG TGCGTACCGG CGCCATCGTC GGCGCCGACA TCGTCGTGGA GTCCGGGCTC
GCGCCCGGCG AGCGCGTCGT CGCTGCGGGC GTCGGCGCGC TGCGCGAAGG CATGGCGGTC
CGCCCGCTCG AGTCCCGCTG A
|
|---|
| Protein sequence | MRIQKSVFAL TTALLCLSLA ACSERPAPVA AVEATRPAPI LTVGRRTADE ALRLPGRVRA
ARRAELSFDV PGFVDSFSLE EGRRVKAGEV VARLDDRIYR SRLDAARAEF ERARNDLARY
QRLWESEQAV ARAEVDDRRA RLEAARTSLA AAERDLADTA IKAPFEGVIT RRRIEPFTNV
QAKQPIAELQ DLRALEVVVN VPERLVRRMR PQQAAVAFLE GERSVEGDRA APGQVLRLEL
QSFAAEADAL TQTYAVVLAV RSVPAGVNLL PGMAVSLEPA ADAGGAPAAD AAITVPLAAV
AADAQGRPGV WVVGDDERVA RRPVRTGAIV GADIVVESGL APGERVVAAG VGALREGMAV
RPLESR
|
|---|
| |