| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmz1t_2694 |
|---|
| Symbol | |
|---|
| ID | 7873436 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thauera sp. MZ1T |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011662 |
|---|
| Strand | + |
|---|
| Start bp | 2917798 |
|---|
| End bp | 2919222 |
|---|
| Gene Length | 1425 bp |
|---|
| Protein Length | 474 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 643699617 |
|---|
| Product | type II secretion system protein E |
|---|
| Protein accession | YP_002889673 |
|---|
| Protein GI | 237653359 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4962] Flp pilus assembly protein, ATPase CpaF |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.00162868 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTTTTCC GCACCGCACG CAAACCGCCC GAAGACTCGT CCACCACCCT GGCCGCAGCG
GCGGATACGC CGGCCGCAAC GCCCGCGCCC GTACCCGAGC CTCCGTTCCG CCCGGGCTTC
GAACCACTCC CGGCAGCTGC CGAAGCAAAC GCGGATTTCA CCTGGCGCAA ACGCATCCAC
GAACGCCTGC TCGACACCAT CGACCTGCGC CGGCGCGATC TCAACCGCAT GTCGGACGAC
GAGTTGCGCG CCGAGACCAC CGCGCTCGTA CGCGAGATCA TCGCCGCCGA GGCCGCGCTT
CCAGGCGGGC TCGACCGCGA ACAGCTGTGC AGCGAGGTGC TCGACGAGGC CATCGGCCTC
GGACCGCTCG AGACCCTGCT CACCGACGAG TCGGTGAGCG AGATCATGGT CAATCGCTTC
GACCAGATCT TCGTCGAACG TGGCGGCCGC ATCGCGCCGC ACCCCACCAC CTTCACCAGC
GACCGCGCGG TGCTCGGCGT CATCGAGCGC ATCGTCGCGC CGCTCGGCCG CCGCATCGAC
GAATCCTCGC CGATGGTCGA TGCCCGGCTG CGCGACGGCT CGCGGGTCAA TGCGATCATC
CCGCCGCTCG CCCTCAAGGG CCCGACGCTC ACCATCCGCA AGTTCGCGCG TCGGGCGCTC
GAGGTCGCTG ACCTCGTCCG CATGGGTTCG CTCTCGCACG AGATGGCCGC ATTCCTGCGC
ACCTGCGTCG AGCAGCGGCG CAACATCGTG GTCTCCGGCG GCACCGGCTC GGGCAAGACC
ACCTTCCTCA ACCTGCTGTC GAACTTCATC CCCGACGGCG AACGCATCAT CACCATCGAG
GACGCCGCCG AGCTGCGCCT GCGCCACAGC CACCTGGTCA GCCTGGAGGC GCGCCCGTCC
AACCTGGAAG GACGCGGCGC GATCAGCATC CGCGACCTCG TGCGCAACGC GTTGCGCATG
CGCCCCGACC GCATCGTGGT GGGCGAATGC CGCGGCGGCG AGGCGCTCGA CATGCTGCAG
GCGATGAACA CCGGCCACGA GGGCTCGATG ACGACCCTGC ACGCGAACAG CCCGCGCGAT
GCGCTCGCCC GCCTCGAGAC GCTCGTCCTG ATGGCCGGCA TGGATCTCCC GCTGGCCGCA
ATCCGCGAGC AGATCGCCAG CGCGGTGGAC ATCATCGTCC AGCAGACCCG CTTCGCCTGC
GGCGCGCGCC GGCTCACCAG CATCACCGAG CTCACCGGCA TGGAGGGCGG ACGCATCCAG
CTGCAGGAAC TCTTCCGCTT CGAGCGCCGC ACCGCCGATT CCCCCACCGC CGACCCGAGC
GGCGGCCACT TCACTGGCTG CGATGCCGTG CCGGGCTTCT ACGACGAACT GCGTCGCCAA
GGGGTCGCGC TCGACCTGCA CCTGTTCGAC CGGAAGCGCT CATGA
|
|---|
| Protein sequence | MFFRTARKPP EDSSTTLAAA ADTPAATPAP VPEPPFRPGF EPLPAAAEAN ADFTWRKRIH
ERLLDTIDLR RRDLNRMSDD ELRAETTALV REIIAAEAAL PGGLDREQLC SEVLDEAIGL
GPLETLLTDE SVSEIMVNRF DQIFVERGGR IAPHPTTFTS DRAVLGVIER IVAPLGRRID
ESSPMVDARL RDGSRVNAII PPLALKGPTL TIRKFARRAL EVADLVRMGS LSHEMAAFLR
TCVEQRRNIV VSGGTGSGKT TFLNLLSNFI PDGERIITIE DAAELRLRHS HLVSLEARPS
NLEGRGAISI RDLVRNALRM RPDRIVVGEC RGGEALDMLQ AMNTGHEGSM TTLHANSPRD
ALARLETLVL MAGMDLPLAA IREQIASAVD IIVQQTRFAC GARRLTSITE LTGMEGGRIQ
LQELFRFERR TADSPTADPS GGHFTGCDAV PGFYDELRRQ GVALDLHLFD RKRS
|
|---|
| |