| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmz1t_2692 |
|---|
| Symbol | |
|---|
| ID | 7873434 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thauera sp. MZ1T |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011662 |
|---|
| Strand | + |
|---|
| Start bp | 2915499 |
|---|
| End bp | 2916359 |
|---|
| Gene Length | 861 bp |
|---|
| Protein Length | 286 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 643699615 |
|---|
| Product | Flp pilus assembly protein CpaB |
|---|
| Protein accession | YP_002889671 |
|---|
| Protein GI | 237653357 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3745] Flp pilus assembly protein CpaB |
|---|
| TIGRFAM ID | [TIGR03177] Flp pilus assembly protein CpaB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.000594167 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTCAAGA GAGTCCCCCG CAACCTCATC ATCCTGGCCG TCGCCTCCCT CTTCGGCCTT
GGCGCCGCGT GGCTCGCCGC ACGCTACCTG GAGGAGCGCG CCACCGAGAT CGAACTGCGC
CAGCAAGGGC AGATGGGCCA TGCGGTGGTC GCCAAGACGG ACCTCGCGGT CGGGACCCCC
CTCACCCGCG ACCTCGTCGC CGTGCGCGAA GTGCCGGTCG AGTGGCTGCA CTCGAGCGCG
ATCACCCCGG AGCAGTTCGA GCGCGCGGCA GGTGCGGTGC TCGCCCAGCC GGCTCGCGGT
GGCGAGCCTC TGGTGTGGTC GCAGCTCGAA GAGCGGCGAC CCGCCACCCT CTCCGCGCAG
CTCGCCCCGG GTCGGCGCGC CACCACGATT CCGGTCGACG AGACCAGCTC GCTCTCCGGC
CTGCTGCGCC CGGGCGACCG CATCGACCTG CTCGCGACCG TGCAGCGCGA CCACCATCAC
CTGACCCTGC CCCTGCTCCA GGGCGTACGC GTGCTCGCGA CCGGGAGCCG CACCCGGCCC
GGCGAGGACG ATGGCGCGGG CGACCTCCTG GGTGGAAGCT TCGGCACCCT GACCCTGGAT
CTCTCCGAGG AGGAGGCGAC CCGGCTCGTC GCCGCACGCG CACTCGCCCG CCTGACCGCG
GTGCTCCGCC ATCCTCGGGA CACAAGAACG GCTCCGCTGC AGCGGACCGA CGCGCTCGCG
CTGCTCGGCC TCGCACCGCC AGCCCGCGAA GCGGGCGTAC CGGTCATCTA CGGCGGCATC
GAGAACCCCG CGCTCGTCCC CACCCCGTCC CCCCTTACCC GCCCCACCCC GCGCGCCGAG
CCTGCCCATG ACCCGGACTG A
|
|---|
| Protein sequence | MLKRVPRNLI ILAVASLFGL GAAWLAARYL EERATEIELR QQGQMGHAVV AKTDLAVGTP
LTRDLVAVRE VPVEWLHSSA ITPEQFERAA GAVLAQPARG GEPLVWSQLE ERRPATLSAQ
LAPGRRATTI PVDETSSLSG LLRPGDRIDL LATVQRDHHH LTLPLLQGVR VLATGSRTRP
GEDDGAGDLL GGSFGTLTLD LSEEEATRLV AARALARLTA VLRHPRDTRT APLQRTDALA
LLGLAPPARE AGVPVIYGGI ENPALVPTPS PLTRPTPRAE PAHDPD
|
|---|
| |