| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmz1t_2647 |
|---|
| Symbol | |
|---|
| ID | 7873388 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thauera sp. MZ1T |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011662 |
|---|
| Strand | - |
|---|
| Start bp | 2863305 |
|---|
| End bp | 2865350 |
|---|
| Gene Length | 2046 bp |
|---|
| Protein Length | 681 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 643699570 |
|---|
| Product | SSS sodium solute transporter superfamily |
|---|
| Protein accession | YP_002889626 |
|---|
| Protein GI | 237653312 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4147] Predicted symporter |
|---|
| TIGRFAM ID | [TIGR00813] transporter, SSS family
[TIGR03648] probable sodium:solute symporter, VC_2705 subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.81017 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGAGGCGCA ACCCCGGCTT CGCGCGCCAG CTGCGCCGCT ACTACGGCAT CTACACCCTC
GGCTTCGCGC TTTTCGTCGT GCTGCTCGCG ATCGGCGAGA GCCTGGGCCT GTCGCAGCAG
CTCATCGGCC ACGTCTTCCT GTTCGTGACG ATTGCGATCT ACGCCACCAT CGGCGTGCTC
TCGCGCACCT CCGACGTCAC CGAGTACTAC GTCGCCGGAC GCCGCGTGCC GGCGCTGTTC
AACGGCATGG CGACCGCGGC CGACTGGATG AGCGCCGCGT CCTTCATCGG TCTGGCCGGT
ACCTTGTACT TCAGCGGCTT CGAGGGCCTG GCCTTCGTGA CCGGCTGGAC CGGCGGCTTC
GTGCTGGTGG CCTTGCTGCT CGCGCCCTAC CTGCGCAAGT TCGGCCAATA CACCATCCCC
GACTTCCTCG GCGCGCGCTA CCAGGGCAAC GTCGCGCGCC TGGTCGGACT GGCGGCGGCG
GTGCTGGCGA GCTTCGTCTA TCTGGTCGCG CAGATCTACG GCGTGGGCCT GGTGACCAGC
CGCTTCGTCA GCGTCGAGTT CGAGATCGGG CTCTTCATCG GCCTGGCCGG CATCCTGGTG
TGCTCCTTCC TCGGCGGCAT GCGCGCCGTG ACCTGGACCC AGGTGGCGCA GTACGTGATC
CTGATCATCG CCTACCTGGT TCCGGTCGTG ATCCTGTCCT ACAAGCTCAC CGGGATTCCG
ATCCCGCAGG CGGTTTACGG CACCGTGCTG CAGCAGATCA GCGCGCGCGA GGACGAGCTC
CTCGAGGCTC CCACCGAGCG CGCGGTGCGC GATCTCTACA GCGCGCGCGC GCGCGACTAC
GCCGACAAGA TCGCCGCGCT GCCCGCCTCG CTCGAGGACG AGCGCCGGCG CATGATCGAC
GAGCTCAACC GCATGCGCCT GGACAGCGCG CCGGCGCGCG ACATCGCACT GACCGAGCGC
GCGTTGCGCG ACCTGCCGCG CACGCCGGCC GAGGCCCGCG AGGCCTGGCA GCGCGCGCGC
GCCGAGGCGC TCGAGCGCGC CCGCCCGCCG CCGCGTCACG CCGAGGCGCA TCCGGGCGCC
ACCGCGAGCG AGTCCGCCAC CGCGCGCAAC AACTTCCTCG CCCTGATGTT CGTGCTGATG
GTCGGCACCG CGGCGCTGCC GCACATCCTG ATGCGCTACT ACACCACGCC CGGCGTCATG
GAGGCGCGGC GCTCGGTGCT GTGGTCGCTG TTCTTCATCT TCCTGCTCTA CGTCACCGCG
CCGGCCTACG CGGTGTTCGC CAAGTGGGAG GTCTATAACA ATCTGGTCGG CTCGAACATC
GCGATCCTGC CCGACTGGGT CGCGTCGTGG GGCAGGGTGG GGCTGGTGCG CATCGAGGAC
CTCAACGGCG ACGGCATCCT GCAACTCGCC GAGCTGCGCC TGAACACCGA CGTGATCGTG
CTCGCCACCC CGGAGATCGC CGGCCTGCCC TACGTGGTAT CGGGCCTGGT CGCGGCCGGG
GGGCTGGCCG CCGCGCTGTC GACCGCCGAC GGCCTTTTGC TGACGATCTC GAACGCGCTG
TCGCACGATC TCTACTACAA GGTCATCAAC CCCAAGGCGA GCGCGCACCG GCGCCTGGTG
ATCTCCAAGT CGCAGCTGCT GGTGGTGGCG GTGGTGGCGG CCTGGGTGGC CTCGATGCGG
CCGGACAACA TCCTCTTCAT GGTCGGCCTG GCCTTCTCGA TCGGTGGCTC GGCCTTCTTC
CCGGCGCTCG TGCTGGGCAT CTTCTGGAAG CGCGCCAACC GCCCGGGGGC GGTCGCCGGC
ATGCTGGCCG GGCTGGCGGT CACGGTGTTC TACGTGGTGC GTACCCATCC CTTCTTCGGC
GGCGCGATGG CGAACGCCTG GTTCGAAATC AACCCGATCT CGGCCGGCGT GTTCGGCGTG
CCGCTCGGCT TTGCGACCAT CGTCGCGGTC AGCCTGCTGA CCAAGCCACC GCCGCAGGAG
ATCCAGGACC TGGTCGACTA CGTACGTTAC CCCGACATCC CGGGACAAAG CCGGCCGCAT
CTTTGA
|
|---|
| Protein sequence | MRRNPGFARQ LRRYYGIYTL GFALFVVLLA IGESLGLSQQ LIGHVFLFVT IAIYATIGVL
SRTSDVTEYY VAGRRVPALF NGMATAADWM SAASFIGLAG TLYFSGFEGL AFVTGWTGGF
VLVALLLAPY LRKFGQYTIP DFLGARYQGN VARLVGLAAA VLASFVYLVA QIYGVGLVTS
RFVSVEFEIG LFIGLAGILV CSFLGGMRAV TWTQVAQYVI LIIAYLVPVV ILSYKLTGIP
IPQAVYGTVL QQISAREDEL LEAPTERAVR DLYSARARDY ADKIAALPAS LEDERRRMID
ELNRMRLDSA PARDIALTER ALRDLPRTPA EAREAWQRAR AEALERARPP PRHAEAHPGA
TASESATARN NFLALMFVLM VGTAALPHIL MRYYTTPGVM EARRSVLWSL FFIFLLYVTA
PAYAVFAKWE VYNNLVGSNI AILPDWVASW GRVGLVRIED LNGDGILQLA ELRLNTDVIV
LATPEIAGLP YVVSGLVAAG GLAAALSTAD GLLLTISNAL SHDLYYKVIN PKASAHRRLV
ISKSQLLVVA VVAAWVASMR PDNILFMVGL AFSIGGSAFF PALVLGIFWK RANRPGAVAG
MLAGLAVTVF YVVRTHPFFG GAMANAWFEI NPISAGVFGV PLGFATIVAV SLLTKPPPQE
IQDLVDYVRY PDIPGQSRPH L
|
|---|
| |