| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmz1t_2635 |
|---|
| Symbol | |
|---|
| ID | 7873376 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thauera sp. MZ1T |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011662 |
|---|
| Strand | - |
|---|
| Start bp | 2839758 |
|---|
| End bp | 2843513 |
|---|
| Gene Length | 3756 bp |
|---|
| Protein Length | 1251 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 643699558 |
|---|
| Product | nitrate reductase, alpha subunit |
|---|
| Protein accession | YP_002889614 |
|---|
| Protein GI | 237653300 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG5013] Nitrate reductase alpha subunit |
|---|
| TIGRFAM ID | [TIGR01580] respiratory nitrate reductase, alpha subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTCATT TTCTCGATCG CCTGAGGTTT TTCGACAAGG TCAAGGAGAC CTTCTCGAAC
GGACACGGTA TCGTCACCAA TGAAGACCGC AACTGGGAGG ATGCCTACCG CAACCGCTGG
CGCCACGACA AGGTGGTGCG CTCCACCCAC GGTGTGAACT GCACCGGCGG CTGTTCCTGG
AAGATCTTCG TCAAGAACGG CCTGGTGTCG TTCGAGATGC AGCAGACCGA CTACCCGCGC
ACCCGCGAGG ACCTGCCCAA CCACGAGCCG CGCGGCTGCC AGCGTGGTGC CTCGTTCTCG
TGGTACCTGT ACTCGCCGCA CCGCATCAAG TACCCGATGA TCCGCGGCCG CCTGCTCGAC
CTGTACCGCG CCGAGCGCAA GGCCGGACGC GACCCGGTCG AGGCCTGGGA GGCGATCCAG
AAGGATCCCG CCAAGCGCGA GAAGTACGTG CACGTGCGCG GCCTGGGTGG CTTCGTGCGC
ACCAGCTGGG ACGAGGTCAC CGAGATCGTC GCCGCAGCCA ACGTCTACAC GATCAAGAAG
TGGGGCCCGG ACCGCATCTA CGGTTTCTCG CCGATTCCCG CGATGTCGAT GATCTCGTAC
GCCGCCGGCG CGCGTTACCT GTCGCTGATC GGTGGTGCCT GCGGCTCGTT CTACGACTGG
TATTGCGACC TGCCGGCCGC GTCGCCGCAG ACCTGGGGCG AGCAGACCGA CGTGCCCGAG
GCCGCCGACT GGTACAACTC GACCTATCTG ATCATCACCG GCGCCAACCT GCCGATGACC
CGCACCCCGG ACGCCCACTT CGCCACCGAA GTGCGCTACA AGGGCACCAA GATCGTGTCG
ATGGCGCCGG ACTACGCCGA GTACGTCAAG TTCGCCGACC TGTGGATGCC CGTCAAGCAG
GGCACCGACG CCGCCGCCTT CCTGGCCATG GGCCACGTCG CGCTGAAGGA ATTCCTCGTC
GAGAAGCAGG ACCCGTACTT CACCGAGTAC GCGCGCAAGT ACACCGACCT GCCGATGCAG
GTCGTGCTGC GCAAGCACGG CGAGGGCTAT GTTTCGGATC GCAACCTGCG CGCTTCCGAC
TTCGACAACA ACCTCGGCGA GTCCAACAAC CCCGAGTGGA AGACCATCGT CTTCGACAAG
AAGAGCGGCC GCTTCATCGC GCCCAACGGC TCGATCGGCT TCCGCTGGGG CGAGGACGGC
AAGTGGAACC TGCTCGAGAA GGCCGGCGCC GACCAGGCCG AGACCGAAGC GGAGCTCACC
TGCATCGGCA GCCAGGACGA GGTCGTCTCG GTGGGCTTCC CGCACTTCGT GCCGGGTGAA
CCCGAGCTGC TGTACCGCAA CGTGCCGGCG CGTCGCCTCA AGCTCGCCAG CGGCGAAGAA
GCCTTCGTGA CCTCGGTGTT CGACATGCAG GTCGCGCAGT ACGGCATCGA CCGCGGCCTG
GGTGGCGCCA ACGTGGCCTC GTCCTACGAC GACGCCAATG TCGCCTACAC CCCGGCCTGG
GCTGCCAAGC AGACCGGCGT GAAGGCCGCC GACCTCGAGC GTACCGGCCG CGAGTTCGCC
GAGAACGCCT CGAAGACGAA GGGCAAGTCC ATGGTGATCA TGGGCGCTGC GATCAACCAC
TGGTACCACA ACGACCTCGC CTACCGCTCG ATCATGAACC TGCTGCACAT GTGCGGCTGC
GTGGGTCAGA CCGGTGGTGG CTGGGCGCAC TACGTGGGCC AGGAAAAGCT GCGTCCGCAA
GCGGGCTGGG CGCCGATCGC GTTCGCGCTC GACTGGCAGC GTCCGCCGCG CCACATGAAC
TCGACCTCGT TCTGGTACTT CCACACCGAC CAGTGGCGCT ACGAGACGGT GGATGCCGAC
TCGCTGCTGT CGCCCGCCGG TCCCTGCCGC AACAAGGGTT CCTCGCTCGC CGACTACAAC
GTCAAGGCGG TGCGCATGGG CTGGCTGCCG TCCGCCCCGC ACTTCAACCG CAACCCGATC
GAACTCGCCG AAGAAGCCGC GCGTGCGGGT GCGACCGACG AGGCGAGCGT GTCGAAATAC
GTGGTCGAAC AGCTCAAGTC GGGCGCGCTC GACGTGTCCT TCGCCGACCC GGATGCCGAG
GAAAACTGGC CGCGCAACCT GATCGTGTGG CGCGCCAACC TGATCGGCTC GTCGGCCAAG
GGCCACGAGT ACTTCCTCAA GCACCTGCTG GGCGCGCAGA ACGGCGTGAT GCAGGAAGGC
GGCGCGGGCA ACAACTGCAA GGAAGTGAAG TGGCGCGAGC ATGGCCCGAC CGGCAAGCTC
GACCTGATGG TGGACATCAA CTTCCGCCTC AACTCGACCG GCGCATACTC CGACATCATC
CTGCCGACGG CGACCTGGTA CGAGAAGAAC GACCTCAACA CCACCGACAT GCACCCCTTC
ATCCACCCGC TGGGTGAGGC GGTGACTCCG GGCTGGGAGT CGAAGTCCGA CTGGCAGATC
TTCCGCACCC TGGCGAAGAC CTTCACCGCG CTCGGCGCCA AGCACCTCGG CACCCGCAAG
GACGTGGTCT CGCTGCCGAT GCAGCACGAC TCGCCGATGG AACTCGCGAC TCCGATGGGC
GTGGGCAAGG ACTGGAAGCA CGGCGAGTGC GATCCGATCC CGGGCAAGAC CATGCCGATG
CTCAAGCTCG TCGAGCGCGA CTACGCTCAG ATCTACAATA AGTACATCGC GCTCGGCCCG
CTGATGGTGA AGTTGGGCAA CAACGTCAAG GGCATCGACT GGGATACCAC CCAGGAGTAC
GAAGAGCTCA AGAAGTGCAA CTACCCGGTG CAGGTCGAAG GTGTTTCGAA GGGCATGCCG
TCGCTCGAGG AAGACATCTA CGTCTGCGAC TCGGTCATGC GCATGGCGCC CGAGACCAAC
GGCGAAGTGG CGCACAAGTC GTGGAGCGCG CTGTCGAAGA AGACCGGCAT CGATCACCAC
CACCTGTACG CCGGCCGTCA CGAGGACAAG ATCACCTTCC GCGACATCGT CGCCCAGCCG
CGCAAGATCA TCACCGCGCC CACCTGGTCC GGCATCGAGT CGGAGACCGT GTCCTACACC
GCGGGCTACA CCAACATCCA CGAGCACATT CCGTTCCGTA CCCTGACCGG TCGTGCGCAC
TTCTACCAGG ACCACGAGTG GTTCCTCGAC TTCGGTGAAG GCTTCTGCGC CTACAAGCCG
CCGGTCGACC TCAAGGCCCA CGAGAAGGTG CCCGACAGCG TGCGCAACAA GCCGCACCTG
ACCCTGTCGT GGATCACCCC GCACTCGAAG TGGGGCATCC ACTCCAGCTA CCAGGACAAC
CTGCGCATGC TCAACCTGTT CCGCGGCGGC CCGTACGTCT GGCTGTCCGA GGAAGAGGCC
GCGACCATCG GCATCCGCGA CAACGACTGG GTCGAGGCGA TCAACGCCAA CGGCGCCACG
GTGGCCCGTG CGGTGGTGTC GCAGCGCATC CCGCGTGGCA TGGCGATCAT GTATCACGCC
CAGGAAAAGA ACGTGAACGT GCCCGGCTCG AACACGACCG GCAAGCGTGG CGGCATCCTG
AACTCGGTCA CCCGCGTCAT CGTCAAGCCC ACCAACATGG TCGGCGGCTA TGCGCAACTG
GCTTACAGCT TCAACTACTA CGGCACCGTC GGTTGCCAGC GTGACGAAGT CGTGGTGATC
CACAAGATCG AGGACCAGGA CATCGACTGG CTGGAGCGTC CGCTCACGCC CGAACGCGAA
GCCCAACGCA ACCCCGTGGG CATCGGCAAG AAGTAA
|
|---|
| Protein sequence | MSHFLDRLRF FDKVKETFSN GHGIVTNEDR NWEDAYRNRW RHDKVVRSTH GVNCTGGCSW
KIFVKNGLVS FEMQQTDYPR TREDLPNHEP RGCQRGASFS WYLYSPHRIK YPMIRGRLLD
LYRAERKAGR DPVEAWEAIQ KDPAKREKYV HVRGLGGFVR TSWDEVTEIV AAANVYTIKK
WGPDRIYGFS PIPAMSMISY AAGARYLSLI GGACGSFYDW YCDLPAASPQ TWGEQTDVPE
AADWYNSTYL IITGANLPMT RTPDAHFATE VRYKGTKIVS MAPDYAEYVK FADLWMPVKQ
GTDAAAFLAM GHVALKEFLV EKQDPYFTEY ARKYTDLPMQ VVLRKHGEGY VSDRNLRASD
FDNNLGESNN PEWKTIVFDK KSGRFIAPNG SIGFRWGEDG KWNLLEKAGA DQAETEAELT
CIGSQDEVVS VGFPHFVPGE PELLYRNVPA RRLKLASGEE AFVTSVFDMQ VAQYGIDRGL
GGANVASSYD DANVAYTPAW AAKQTGVKAA DLERTGREFA ENASKTKGKS MVIMGAAINH
WYHNDLAYRS IMNLLHMCGC VGQTGGGWAH YVGQEKLRPQ AGWAPIAFAL DWQRPPRHMN
STSFWYFHTD QWRYETVDAD SLLSPAGPCR NKGSSLADYN VKAVRMGWLP SAPHFNRNPI
ELAEEAARAG ATDEASVSKY VVEQLKSGAL DVSFADPDAE ENWPRNLIVW RANLIGSSAK
GHEYFLKHLL GAQNGVMQEG GAGNNCKEVK WREHGPTGKL DLMVDINFRL NSTGAYSDII
LPTATWYEKN DLNTTDMHPF IHPLGEAVTP GWESKSDWQI FRTLAKTFTA LGAKHLGTRK
DVVSLPMQHD SPMELATPMG VGKDWKHGEC DPIPGKTMPM LKLVERDYAQ IYNKYIALGP
LMVKLGNNVK GIDWDTTQEY EELKKCNYPV QVEGVSKGMP SLEEDIYVCD SVMRMAPETN
GEVAHKSWSA LSKKTGIDHH HLYAGRHEDK ITFRDIVAQP RKIITAPTWS GIESETVSYT
AGYTNIHEHI PFRTLTGRAH FYQDHEWFLD FGEGFCAYKP PVDLKAHEKV PDSVRNKPHL
TLSWITPHSK WGIHSSYQDN LRMLNLFRGG PYVWLSEEEA ATIGIRDNDW VEAINANGAT
VARAVVSQRI PRGMAIMYHA QEKNVNVPGS NTTGKRGGIL NSVTRVIVKP TNMVGGYAQL
AYSFNYYGTV GCQRDEVVVI HKIEDQDIDW LERPLTPERE AQRNPVGIGK K
|
|---|
| |