| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmz1t_2535 |
|---|
| Symbol | |
|---|
| ID | 7873974 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thauera sp. MZ1T |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011662 |
|---|
| Strand | + |
|---|
| Start bp | 2733544 |
|---|
| End bp | 2734215 |
|---|
| Gene Length | 672 bp |
|---|
| Protein Length | 223 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 75% |
|---|
| IMG OID | 643699457 |
|---|
| Product | general secretory pathway protein J |
|---|
| Protein accession | YP_002889514 |
|---|
| Protein GI | 237653200 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4795] Type II secretory pathway, component PulJ |
|---|
| TIGRFAM ID | [TIGR01711] general secretion pathway protein J
[TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.0358104 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAGCCGT ACCGCACTCC CCCCCCTGCC CTCGCCGCTC GTCGCCGCTC CGCGCGCTGT
CGGGGCGCCG GCCTGACCCT GATCGAGCTG ATGGTGGCGA TGGCCTTGCT CGGCGTGATC
GGCGTGCTCA CCTGGCGCGC CACCAGCCAA CTGGTGGATG GGCGAGAGCG CATCGGCGCC
GAGCTCGCGC GCTGGCAGGC GGTGATGCAC GCGAGCGCAC TGATCGAGCG CGAGCTGATG
CAGATCGCCC CGCCGGAGCT CGCCGACGGC ACCGGCGCGA CCGCAGCCGC CACGGGCGCG
GCGCTCCCCG CGCTCGAACT CGAGGCCGAA CCCGACGGCC ACCGCAGCCG GCTCGCGTGG
ACGGTGGTCG GCGGCGAGCA GGGCTTCGGT CGGGTCGAAC TCCTCCATCG GGATGGTCGC
CTCGAAGCCC TCGTCTGGCC CGACCGCGAG GCGCGCGGCG AGGCGGTCCG GCTGCCGCTG
CTCGACGGCG TCGATGCCCT GCGCTGGCGC TTGCTCGCGG CCGGCCAGCC GCACACGCAG
TGGCCCATCG CCGAGAGCCG AAGCCGCCGG CGCGGCCGCG TCGCGCTCGT CACGCCGCTG
CCCGAGGCGG TCGAACTCAC CCTGGAGCTC GCCGATGTCG GCCCGCTCAC CCGCGTTTTC
GCGCTGCGCT AG
|
|---|
| Protein sequence | MQPYRTPPPA LAARRRSARC RGAGLTLIEL MVAMALLGVI GVLTWRATSQ LVDGRERIGA
ELARWQAVMH ASALIERELM QIAPPELADG TGATAAATGA ALPALELEAE PDGHRSRLAW
TVVGGEQGFG RVELLHRDGR LEALVWPDRE ARGEAVRLPL LDGVDALRWR LLAAGQPHTQ
WPIAESRSRR RGRVALVTPL PEAVELTLEL ADVGPLTRVF ALR
|
|---|
| |