| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmz1t_2301 |
|---|
| Symbol | |
|---|
| ID | 7085286 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thauera sp. MZ1T |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011662 |
|---|
| Strand | - |
|---|
| Start bp | 2587687 |
|---|
| End bp | 2589534 |
|---|
| Gene Length | 1848 bp |
|---|
| Protein Length | 615 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 643699320 |
|---|
| Product | peptidase M61 domain protein |
|---|
| Protein accession | YP_002355936 |
|---|
| Protein GI | 217970702 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3975] Predicted protease with the C-terminal PDZ domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.9294 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGCCC GTTCCACCCG CTTGTCCGCC GCCGCGTCGG CGCTCCATGG CCGTCCGCCG
CCCGCGGTCG AATACCGCAT CCGCCCGGCG AACCCCGGCG CCCACCTCTT CGAGGTGAGC
TGCACGGTGG CCGAGCCCGA CCCCGCGGGG CAGGTCTTCA GCCTGCCGGC GTGGATCCCG
GGCAGCTACA TGATCCGCGA GTTCGCGCGC AACATCGTGC GCCTGCGTGC CGAGGCCGAC
GGCGAGCCCT GCGCGCTGGA GAAGCTCGAC AAGCACACCT GGCGCGCGGC TGCGGTGCCG
GGCGCGCGCG TGCTGAGCGT GCATTACGAG GTCTATGCCT GGGACCTGTC GGTGCGCACC
GCCCATCTCG ACACCACACA CGGCTTCTTC AACGGCACGA GCGTCTTCCT CGCGGTGGCG
GGGCGTACCG AAGCACCTTG CGTGGTGACC ATCGAACGCC CCGAGGGCGA CTGCGGGCGC
GACTGGAAGC TCGTCACCGC GCTGCCGCCC GAGCACGGCC ACCCGGGCCA GGCCTGCCGC
TTCGGCCGCT TCCGCGCCGC GGACTACGAC GAGCTCATCG ACCACCCGGT CGAGATGGGC
CGTTTCACGC TGGCACGCTT CGAGGCCGCG GGCGTGCCGC ACGACATCGC CCTCACCGGC
CGCCACGACT GCGACCTCGA GCGCCTGTGC GCCGACCTGC GCCGGGTGTG CGAATGGCAG
ATCGCGCTCT TCGGCACGCC GGCGCCGGTG GACTATTACG CCTTCCTGAC CATGGTGGTG
GGAGAGGGCT ACGGCGGGCT GGAGCATCGC GCCTCGACCG CGCTGATCTG CAGCCGCGCC
GAGCTGCCGT GGAAGGGCAT GGAGGGTCTG CCCGACGGCT ACAAGAGCTT CCTCGGCCTG
TGCAGCCACG AGTATTTCCA CACCTGGAAC GTCAAGCGCA TCAAGCCGGT GGCGTTCACG
CCCTACGATC TCGCGCGCGA GAACCACACC CGGCTGCTGT GGGCCTTCGA GGGCTTCACC
TCGTATTACG ACGACCTCGC CCTGGTGCGC AGCGGCGTGA TCGGCATCGA TGACTACCTG
GGGCTGCTCG GCAAGACCAT CGCCAACGTC TTGCGCGGCA GCGGCCGGCT CAAGCAGAGC
GTGGCGGAGT CCTCCTTCGA CGCGTGGACC AAGTACTACC GCCAGGACGA GAACGCACCC
AATGCCATCG TCAGCTACTA CGCCAAGGGT GCGCTGATCG CGCTCGCGCT CGACCTGCAG
CTGCGCGCGG GCAGCGAGGG TGCGGCCAGC CTGGACGACG TGATGCGGCT GCTGTGGCGG
CGCCACGGCC TCACCGGCGT GGGCGTGCCG GAGGATGGCA TCTTCGCCGC GGTGCGCGAC
GCGGGCGGCG AACGCCTCGG CGCGCGCCTG GCGAAATGGC TGCAGAAGGC GGTGGACGGC
TGCGAGGATC TGCCGCTGGC GCGCCTGCTG CGTCCCTTCG GCGTGAGCCT GCGCGCCGAG
GCGGCGGGGA CCGCGCCGGT GCTCGGGATG AAGCTCGGCG GGGGCAGTGG CGAGGCGAAG
GTCGCCAATG TGTACGACGA CGGTCCGGCG CAGGCGGCGG GCGTCTCGGC CGGGGACGTG
CTGATCGCGC TCGACGGGCT GAGGATCTCC AGCGCCAAGG GGCTGGAGGA TCTGCTCGCC
CGTCGTGGTG CGGGCGACGA GGTGGAACTG CATCTCTTCC GTCGCGACGA GCTGATGAGC
TTCCGTGCGG TGCTCGCTGC ACCGCCTGCC GAGCGCCAGG AGCTCAAGCT GGCGCCGCGC
GCCGATAGCG CGGCAGCGAA GCTGCGGCGG GGTTGGTTGG GGGGGTGA
|
|---|
| Protein sequence | MSARSTRLSA AASALHGRPP PAVEYRIRPA NPGAHLFEVS CTVAEPDPAG QVFSLPAWIP
GSYMIREFAR NIVRLRAEAD GEPCALEKLD KHTWRAAAVP GARVLSVHYE VYAWDLSVRT
AHLDTTHGFF NGTSVFLAVA GRTEAPCVVT IERPEGDCGR DWKLVTALPP EHGHPGQACR
FGRFRAADYD ELIDHPVEMG RFTLARFEAA GVPHDIALTG RHDCDLERLC ADLRRVCEWQ
IALFGTPAPV DYYAFLTMVV GEGYGGLEHR ASTALICSRA ELPWKGMEGL PDGYKSFLGL
CSHEYFHTWN VKRIKPVAFT PYDLARENHT RLLWAFEGFT SYYDDLALVR SGVIGIDDYL
GLLGKTIANV LRGSGRLKQS VAESSFDAWT KYYRQDENAP NAIVSYYAKG ALIALALDLQ
LRAGSEGAAS LDDVMRLLWR RHGLTGVGVP EDGIFAAVRD AGGERLGARL AKWLQKAVDG
CEDLPLARLL RPFGVSLRAE AAGTAPVLGM KLGGGSGEAK VANVYDDGPA QAAGVSAGDV
LIALDGLRIS SAKGLEDLLA RRGAGDEVEL HLFRRDELMS FRAVLAAPPA ERQELKLAPR
ADSAAAKLRR GWLGG
|
|---|
| |