| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmz1t_2252 |
|---|
| Symbol | |
|---|
| ID | 7083684 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thauera sp. MZ1T |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011662 |
|---|
| Strand | - |
|---|
| Start bp | 2537751 |
|---|
| End bp | 2539169 |
|---|
| Gene Length | 1419 bp |
|---|
| Protein Length | 472 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 643699271 |
|---|
| Product | DNA repair protein RadA |
|---|
| Protein accession | YP_002355887 |
|---|
| Protein GI | 217970653 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG1066] Predicted ATP-dependent serine protease |
|---|
| TIGRFAM ID | [TIGR00416] DNA repair protein RadA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.130347 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCACGGC AGAAATCCGC TTTCGTCTGC ACCGAATGCG GTGCGCAGGC CGTGCGCTGG
CAAGGCCAGT GCCCGCAGTG CCAGGCCTGG AACACCCTTG TCGAAACCGT GCTCGAGCCC
GCAGCGCCGG CTGCGGGCAG CCGCTTCGCC GCGCTCGCCG GCGAGACCAG CCGGCTGCAG
CCCCTGTCCG CGCTCGAACC CCGCGAAGAA CCCCGCCAGC CCACCGGTCT CGACGAGTTC
GACCGCGTGC TCGGTGGCGG CCTGGTCGCC GGCGGCGTGG TGCTGATCGG CGGCGACCCG
GGTATCGGAA AATCCACCCT GCTGCTGCAG GCGCTCTCCA ACCTGGCCGC GACGAGTGCG
TCGGCTGGCA GCGAGGGCGC GACGGGCAAG GGCACCAAGG CGGGCGGCGT CATCTACGTC
AGCGGCGAGG AGTCGGGCGA GCAGGTCGCG CTGCGTGCCC AGCGCCTGCA GTTACCGCAG
TCGCCCCTGC AGATGCTCGC CGAGATCAAC CTCGAACGCA TCCTCCACAC CCTGCGCGAG
GCGCGCCCGC GCGTGGCGGT CATCGACTCG ATCCAGACCG TCTATTCCGA GACCCTGCAG
TCCGCCCCCG GCTCGGTCGC CCAAGTGCGC GAATGCGCCG CCCAGCTCAC CCGCTTTGCC
AAGCAGAGCG GAACCAGCCT GATCCTGGTC GGCCACGTCA CCAAGGACGG CACGCTCGCC
GGCCCGCGCG TGCTCGAGCA CATCGTAGAC ACCGTGCTGT ACTTCGAGGG CGACACGCAC
TCCAGCTTCC GCCTGATCCG CGCCTTCAAG AACCGCTTCG GCGCGGTCAA CGAGCTCGGC
GTGTTCGCCA TGACCGAGCG CGGCCTGCGC GGTGTGTCCA ATCCCTCCGC GATCTTCCTG
TCGCAGCACT CGCAGCAGGT CGCCGGCAGC TGCGTGCTGA TCACCCAGGA GGGCACGCGC
CCGCTGCTGG TCGAGGTGCA GGCCTTGGTC GATTCGTCGC AGAGCCCCAA CCCGCGCCGG
CTGTCGGTGG GCCTGGAGCA GAACCGCCTG GCGATGCTGC TCGCGGTCAT GCACCGTCAC
GCCGGCGTGG TCTGCTTCGA CCAGGACGTT TTCGTGAATG CGGTCGGCGG CGTCAAGATC
ACCGAGCCGG CCGCCGACCT CGCGATCCTG TTCGCGATCG TCTCCTCGCT GCGCGACCGC
CCGCTTCGGC GCGGCCTCGC GGTGTTCGGC GAGGTCGGTC TCGCCGGCGA GATCCGGCCC
GCACCGCGTG GCCAGGAGCG CCTGAAGGAA GCCGCCAAGC TCGGCTTCGA CACCGCCATC
GTTCCGCGCG CCAATGCGCC GAAGCATCCG ATCGAGGGCC TGAAGGTGAT CGCGGTCGAG
CGCGTGGAGG AGGCCCTGGA GCAGTTGCGC GGGTTGTAA
|
|---|
| Protein sequence | MARQKSAFVC TECGAQAVRW QGQCPQCQAW NTLVETVLEP AAPAAGSRFA ALAGETSRLQ
PLSALEPREE PRQPTGLDEF DRVLGGGLVA GGVVLIGGDP GIGKSTLLLQ ALSNLAATSA
SAGSEGATGK GTKAGGVIYV SGEESGEQVA LRAQRLQLPQ SPLQMLAEIN LERILHTLRE
ARPRVAVIDS IQTVYSETLQ SAPGSVAQVR ECAAQLTRFA KQSGTSLILV GHVTKDGTLA
GPRVLEHIVD TVLYFEGDTH SSFRLIRAFK NRFGAVNELG VFAMTERGLR GVSNPSAIFL
SQHSQQVAGS CVLITQEGTR PLLVEVQALV DSSQSPNPRR LSVGLEQNRL AMLLAVMHRH
AGVVCFDQDV FVNAVGGVKI TEPAADLAIL FAIVSSLRDR PLRRGLAVFG EVGLAGEIRP
APRGQERLKE AAKLGFDTAI VPRANAPKHP IEGLKVIAVE RVEEALEQLR GL
|
|---|
| |