| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmz1t_2249 |
|---|
| Symbol | |
|---|
| ID | 7083681 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thauera sp. MZ1T |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011662 |
|---|
| Strand | + |
|---|
| Start bp | 2534926 |
|---|
| End bp | 2535507 |
|---|
| Gene Length | 582 bp |
|---|
| Protein Length | 193 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 643699268 |
|---|
| Product | NADH ubiquinone oxidoreductase 20 kDa subunit |
|---|
| Protein accession | YP_002355884 |
|---|
| Protein GI | 217970650 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1941] Coenzyme F420-reducing hydrogenase, gamma subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.00641529 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATGGACA TCGACATCGC AAAGATCGAC GCTGGCGGCG CGCCACGCAA GCTCAAGGTC
GCCACCGTCT CGCTCGCGGG CTGCTTCGGC TGCCACATGT CCTTTCTCGA CATCGACGAG
CGCCTGCTGC CGCTGCTCGA ACTCGTCGAG TTCGACCGCT CGCCGCTCAC CGACATCAAG
CACTGCGGCC CCTGCGACAT CGGCCTCATC GAGGGCGGGG TGTGCAACGC CGAGAACGTG
CATGTGCTGC GCGAATTCCG CGCCAACTGC AAGGTGCTGA TCGCGCTCGG CGCGTGCGCG
GTCAACGGCG GGCTGCCTGC ACAGCGCAAT CACCTCGAGC TCGCCGACCT CCTGCAGGAG
GTCTATCGAA CCGGCCACGG TCTCGCCGAG GGCAGCCGCA TTCCCGACGA CCCCGAGCTG
CCGCTGCCGC TCAACCAGGT CCATCCGGTG CATGAGGTGG TGAGGATCGA TTACTTCTTG
CCTGGCTGCC CGCCATCGGG CGACGCGATC TGGGCCTTCC TGACCCAGTT GATCGAAGGC
AAGGACCCGA GCCTGGGACA TGGGCTGCTG CACTATGACT GA
|
|---|
| Protein sequence | MMDIDIAKID AGGAPRKLKV ATVSLAGCFG CHMSFLDIDE RLLPLLELVE FDRSPLTDIK
HCGPCDIGLI EGGVCNAENV HVLREFRANC KVLIALGACA VNGGLPAQRN HLELADLLQE
VYRTGHGLAE GSRIPDDPEL PLPLNQVHPV HEVVRIDYFL PGCPPSGDAI WAFLTQLIEG
KDPSLGHGLL HYD
|
|---|
| |