| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmz1t_2220 |
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| Symbol | |
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| ID | 7083652 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thauera sp. MZ1T |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011662 |
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| Strand | + |
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| Start bp | 2498356 |
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| End bp | 2501829 |
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| Gene Length | 3474 bp |
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| Protein Length | 1157 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 643699240 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_002355856 |
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| Protein GI | 217970622 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCCCTCT CCCTCGACGC CCTCCTCTCC CGGCTCGCCA CGGTCAAGCT GCCCAAGCCC
GGCGGCCGGC TCGAACTCGA GCCGCTCGCC GGCTCGGCAG ACGCCCTCGC CATCGCCCAG
CTCGCCAGCC GCGGCCGCAT GCTGGTGGTG ATCACGGCCA ACCCGCTCGA CGCCCAGCGC
CTGCAGGACG AGATCGCCTG GGTCGCACCC GGCCTGCGCG CGCACCTGCT GCCCGACTGG
GAGACCCTGC CCTACGACAG CTTCTCGCCC CACCAGGACC TGATCTCCGA GCGGCTGTCG
ACGCTCTACG CCATCAGCCG CGGCGAGACC GACATCGTGC TGGTGCCCGC CTCCACCGCG
CTGTACCGCA TGGCGCCGCC GGGTTTTCTT GCCGCGTACA CCTTTTTCCT CAAACAGGGC
GAGAAGCTCG ACGTCGAGCA GTTCAAGGCG CAGATGGCGC TCGCAGGCTA TGCGCACGTC
ACCCAGGTGG TGAGCCCGGG CGAGTTCTCG GTGCGCGGCG GGCTGGTGGA CCTGTTCCCG
ATGGGTTCGC CGCTGCCCTT CCGTATCGAC CTCTTCGACG ACGAGGTCGA GAGCATCAAG
ACCTTCGACC CCGACACCCA GCGCACGGTG TATCCCACCA AGGAGATCCG TCTGCTGCCG
GCGCGCGAGT TCCCGCTCGA CGACAAGGGG CGCACGCGCT TTCGCAGCCG CTTCCGCGAG
ACCTTCGAGG GCGACCCGAC GCGCGCGTCG ATCTACAAGG ACGTCTCCAA CGGCATCGCC
CCCGCCGGCA TCGAGTACTA CCTGCCGCTG TTCTTCGACG AGACCGCGAC GCTGCTGGAC
TACCTGCCCG CCGAGACGCC GGTGCTGCTG CACCGCGACG TGCCGGCGGC GATCGCCGAG
TTCTGGAAGG ACACGCGCTC GCGCCACGAC CTGTTGAAGG GCGACCGCAG CCGCCCGGTG
CTGGCACCCG AGCAGCTCTT CCTGACCGAC GAGGCCTTCT TCATCGCGCT GAAGAACCTG
CCGCGCCTGG CGATCGGGGC CGAAGTGGGC GCCAAGGCGG GCGCCGAGCC CGCGGCCGCC
CGCACCGACG CGCTCGCCCT GCCCCCGCCC GAGGTCGCGG TCGAGCGCAA GGCCACCGAC
CCGCTGCACA AGCTCAAGGC CTTCCTCGAC GGCTTCGACG GTCGCGTGCT GCTGCTGTCG
GACTCGCCCG GCCGGCGCGA GACCATGGCC GAGTTCTTCG CCGAGTACGA CGTGCGCCCC
GAGGCCACGG CCGATTTCGG CGCCTTCCTG GATTCCGACG CCCGCCTCGC GCTTGGCGTC
GCCCCGCTCG CGCGCGGCTT CGTTCTACCG GCTGCAAGGC TCGCGGTGCT GACCGAGACC
GAGCTCTACG CCGCCACCGC GCGCAGCCGC GTGCGCCGCG ACGCGCGCAA GGCCGCCACC
ATGGAAGGCT GGCTGCGCGA CCTGTCCGAG CTCAAGATCG GCGACCCGGT GGTGCACGTC
TCGCACGGCA TCGGCCGCTA CCTGGGCCTC CTCCACATGA ACCTCGGCGA GGGCGACACC
GAGTTCCTGC ATCTGGAGTA CAACGGCGGC GACAAGCTCT ATGTGCCGGT GTCGCAGCTG
CACGTGATCA CCCGCTACGC CGGCGCCGAC CCCGAGGCGG TCGACCTGCA CCGCCTCGGC
TCCGGCCAGT GGGAGAAGGC CAAGAAGAAA GCCGCGATGC AGGTGCGCGA CACCGCCGCC
GAACTGCTCG CGCTCTATGC CCAGCGCGCT GCCCGCCCCG GCCACCGCTT CGACTTCAAG
CAGCATGACC TCGAAGCCTT CGCCGAGGCC TTCGGCTTCG AGACCACGCC CGACCAGCAG
GCCGCCATCG ACGCGGTGGT GGCCGACATG AAATCCGGCC GCCCGATGGA CCGCCTGGTG
TGCGGCGACG TCGGCTTCGG CAAGACCGAG GTCGCGCTGC GCGCCGCCTT CATCGCGGTG
GCCGACGGCA AGCAGGTGGT GGTGCTGTGC CCGACCACCC TGCTCGCCGA GCAGCACTAC
CAGACCTTCG CCGACCGCTT CGCCGACTGG CCGATCAAGC TCGCCGAGCT GTCGCGCTTC
AAGTCGGCCA AGGAGCAGGC CGAGGCCCTG CAGCTCCTCG CGGAGGGCAA GGTCGACATC
ATCATCGGCA CCCACCGTTT GCTGCAGAAG GACGTGATCT TCAAGCGCCT CGGCCTGGTG
ATCATCGACG AGGAGCACCG CTTCGGCGTG CGCCAGAAGG AGGCCTTGAA GCAATTGCGC
TCCGAGGTCG ACATCCTGAC CCTGACCGCC ACGCCGATCC CGCGCACCCT GGGCCTGGCG
ATGGAGGGCC TGCGCGAGTT CTCGGTGATC GCCACCGCGC CGCAGAAGCG CCTGGCGATC
AAGACCTTCG TCCAGCCCTC CAGTCGCGGC CTGATCCGCG AGGCGGTGCT GCGCGAGTTC
AAGCGCGGCG GCCAGGTTTA CTTCCTGCAC AACGAGGTCG ACACCATCGA CAACATGAAG
GACGACCTCG AGGAGCTGCT GCCCGAGGCG CGCATCGTCG TCGGCCACGG GCAATTGCCC
GAGCGCGAGC TCGAACGCGT GATGCGCGAC TTCACCCAGC AGCGCGCCAA CCTGCTGCTG
TGCACCACCA TCATCGAGAC CGGCATCAAC ATCCCCACCG CCAACACCAT CATCATCAAC
CGCGCCGACC GCTTCGGCCT GGCGCAGCTG CACCAGCTGC GCGGCCGCGT CGGGCGCAGC
CACCACCAGG CCTACGCCTA CCTGCTGACC CAGCCGGGCG CCAAGCCCAG CGCGCAGGCG
CAGAAAAGGC TCGAAGCCAT TGCGATGATG GAAGACCTCG GCTCCGGCTT CTACCTGGCG
ATGCACGACC TCGAGATCCG CGGCGCCGGC GAGGTGCTGG GCGAGAACCA GTCGGGCGAG
ATCCAGCAGG TCGGCTTCAG CCTGTACACC GAGATGCTCA AGCGTGCGGT CAAGGACCTG
CAGGCCGGCA AGGAGCCCGA CCTGTCGCAG CCGCTGGAGG TCGTCTCCGA GATCAACCTG
CACACCCCGG CGCTGCTGCC CACCGACTAC TGCCCCGACG TGCAGGAGCG CCTGACGCTG
TACAAGCGCC TGGCCAACTG CGAGATGGAA GAAGATTTGC GTGCGCTGCA GGAAGAGCTC
ATCGACCGCT TCGGCGAGCT CCCGGCGCAG ACCGCCGCGC TGATCGAGAC CCACCGCCTG
CGCATGCTGG TGAAGGACTA CGGGGTGCAC AAGCTCGATG CGTCCGATGC GCAGATCAGC
GTGCAGTTCG CCAAGGACGC GCCGATCGAC CCGGTCAAAG TCATCTTCCT GATCCAGAAG
GACCGCAGCA CCAAGATGGC CGGCCCCGAG AAGCTCGTGC GCCGTGCCAG CCTGCCCAAC
CTCAAGGAGC GCGTGAAGGC GGTGAAGGAC CTGCTCGAGG CGGTGAAGGC CTGA
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| Protein sequence | MSLSLDALLS RLATVKLPKP GGRLELEPLA GSADALAIAQ LASRGRMLVV ITANPLDAQR
LQDEIAWVAP GLRAHLLPDW ETLPYDSFSP HQDLISERLS TLYAISRGET DIVLVPASTA
LYRMAPPGFL AAYTFFLKQG EKLDVEQFKA QMALAGYAHV TQVVSPGEFS VRGGLVDLFP
MGSPLPFRID LFDDEVESIK TFDPDTQRTV YPTKEIRLLP AREFPLDDKG RTRFRSRFRE
TFEGDPTRAS IYKDVSNGIA PAGIEYYLPL FFDETATLLD YLPAETPVLL HRDVPAAIAE
FWKDTRSRHD LLKGDRSRPV LAPEQLFLTD EAFFIALKNL PRLAIGAEVG AKAGAEPAAA
RTDALALPPP EVAVERKATD PLHKLKAFLD GFDGRVLLLS DSPGRRETMA EFFAEYDVRP
EATADFGAFL DSDARLALGV APLARGFVLP AARLAVLTET ELYAATARSR VRRDARKAAT
MEGWLRDLSE LKIGDPVVHV SHGIGRYLGL LHMNLGEGDT EFLHLEYNGG DKLYVPVSQL
HVITRYAGAD PEAVDLHRLG SGQWEKAKKK AAMQVRDTAA ELLALYAQRA ARPGHRFDFK
QHDLEAFAEA FGFETTPDQQ AAIDAVVADM KSGRPMDRLV CGDVGFGKTE VALRAAFIAV
ADGKQVVVLC PTTLLAEQHY QTFADRFADW PIKLAELSRF KSAKEQAEAL QLLAEGKVDI
IIGTHRLLQK DVIFKRLGLV IIDEEHRFGV RQKEALKQLR SEVDILTLTA TPIPRTLGLA
MEGLREFSVI ATAPQKRLAI KTFVQPSSRG LIREAVLREF KRGGQVYFLH NEVDTIDNMK
DDLEELLPEA RIVVGHGQLP ERELERVMRD FTQQRANLLL CTTIIETGIN IPTANTIIIN
RADRFGLAQL HQLRGRVGRS HHQAYAYLLT QPGAKPSAQA QKRLEAIAMM EDLGSGFYLA
MHDLEIRGAG EVLGENQSGE IQQVGFSLYT EMLKRAVKDL QAGKEPDLSQ PLEVVSEINL
HTPALLPTDY CPDVQERLTL YKRLANCEME EDLRALQEEL IDRFGELPAQ TAALIETHRL
RMLVKDYGVH KLDASDAQIS VQFAKDAPID PVKVIFLIQK DRSTKMAGPE KLVRRASLPN
LKERVKAVKD LLEAVKA
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