Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tmz1t_1985 |
Symbol | |
ID | 7083740 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thauera sp. MZ1T |
Kingdom | Bacteria |
Replicon accession | NC_011662 |
Strand | - |
Start bp | 2243968 |
End bp | 2245887 |
Gene Length | 1920 bp |
Protein Length | 639 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 643699010 |
Product | diguanylate cyclase with PAS/PAC sensor |
Protein accession | YP_002355632 |
Protein GI | 217970398 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2199] FOG: GGDEF domain [COG3614] Predicted periplasmic ligand-binding sensor domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.267533 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCTCGACC GCAGCACGGC CGCCTGGCTC GCGCTCATCC TGGGCCTGCT CCTGACGGCG GTGCTGTGGA GATACGTCGA CGCCCATCTC GAGGAGCGGA CGCGCGACCG CTTCGCCACG CACGCCACGC TGGCCCGCGA CAACCTGCTC TCGCGCGTGC AGGCCTACGA GCAGGTGCTG CATGGCGGCG CCGCGCTGTT CGCCGCGAGC GACCACGTCG GCCGGTCCGA GTGGGCGGCC TATGTCGCAG CCCTCCACCT CGAGCGCTCG CTGCCCGGTA TCCAGGGCAC CGGCTTCACC GTCATGCTGC TCCCGGCGCA GCTGGAGGCC CACGTCGCGG CGGTGCGCGC CGAAGGCTTC CCCGACTACA CGGTACATCC GCCCGGGTAT CGCGACCGCT ACAGCAGCAT CGTCTACCTG GAGCCCTTCG ACGGGCGCAA CCGGCGCGCC TTCGGCTACG ACATGTATTC CGAGCCGGTG CGCCGCGAGG CCATGGAGCG CGCGCGCGAC ACGGGAACGG CCGCGCTCAG CGGCAGGGTC ACCCTGGTTC AGGAGTTCGG CACCGAGGTG CAGCCCGGCT TCCTGATCTA CCTGCCCGTG TACGCGAAGG CCATGCCGGT CGCGAGCGTG GAGCAGCGCC GCGCCGCCTT GCTGGGCTAC GTCTACGCGC CGTTCCGCGC GTACGACATG ATGCAGGCCA TCTTCCGCGA CGACCTGCGC GACGCCGACA TCGAACTGCA CGACCTGCAC GAATCGCCGC AGACCCTGCT CTACGCCTCG GCCGAGCGCA ATGCCGCCGC GCACTACGTC GTCACCCACG CGGTCGAGGT CGCAGGGCGC GAATGGGTGG TCCGCTTCAG CAGCACGCCG GCCTTCGAGG CCGACCACGC GAGCGCGGAA CCCGCCCTGA TCCTCTACGG TGGCAGCGCT CTCAGCCTGA TGCTGTTCGC GGTGATGCAC AGCAACGCCC GCCACCGCCG CCGCATGCGT GCCGCCGCGT CGCACCTGGC GCACAGCCGC GACGAGTTCC GCACCCTGGT CGAGAACGTG CCCGGCGTCG TCTTCCGCTG CCAGATCGAA CCGCCCTGGA GGGTGATGCA CATCAGCCGC GGGATCACCG CGCTCACCGG GGCGACACCC GAGGATTTCA TGTCCGGTCG ATTGTCGTTC GGAGACTTCA TCCTGCATGA GGACGTCCCC ACGATCGTCG CCGCGATCGA GAGCGCACGC ATCAGTCACA CCAACTACGA GGTGGAATAC CGCATGCGCG GGCGCGACCG GCGCGTCCAT TGGGTCAGCG AGCGCGGCCG CGTGGCGGTC GACGCCGATG ATGAACCGCT CCGGCTCGAC GGGGTGATCA TCGACATCAC CGAACGCAAG GCCGCCGAGG AAGCGATCCG CAATCTCGCC TTCGTCGACA CGCTGACCCA GCTCCCCAAC CGCCGTTTCC TGCTCGACCG CCTGCGCCAG GGCCTGGCCA ACGCGCGCCG CCACGGCCGC CACGGGGCGC TGCTGTTCAT CGATATCGAC CACTTCAAGC GCGTAAACGA CACCTACGGC CACGAGGCCG GCGACCAGCT GCTATGCGAG ATCGCGGCGC GCCTGCGCCA GGTGGTGCGC GAGGGCGACA CCGTGGCGCG CCTCGGTGGA GACGAGTTCG TGGTGATGCT GGAGGATCTG GGCGACGCCA CAGCCGAGGC GGGCGAAAAG GCAGCCCTGA TCGCCGGCAA CATCCTCGCC GCACTCAACG AGCCATACGC AATCGGGGCA GTGCGTCATC ACAGCACGCC CAGCATCGGC ATCGCCTGCT TCGACGGCGG CGAGCAGCGC GCCGAAGAAC TGCTGCGGCG GGCCGACGAG GCGATGTACC GCGCCAAGGC CGGCGGACGC AACCGGCTCG AGACGCTGAA CGCCTCCTAG
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Protein sequence | MLDRSTAAWL ALILGLLLTA VLWRYVDAHL EERTRDRFAT HATLARDNLL SRVQAYEQVL HGGAALFAAS DHVGRSEWAA YVAALHLERS LPGIQGTGFT VMLLPAQLEA HVAAVRAEGF PDYTVHPPGY RDRYSSIVYL EPFDGRNRRA FGYDMYSEPV RREAMERARD TGTAALSGRV TLVQEFGTEV QPGFLIYLPV YAKAMPVASV EQRRAALLGY VYAPFRAYDM MQAIFRDDLR DADIELHDLH ESPQTLLYAS AERNAAAHYV VTHAVEVAGR EWVVRFSSTP AFEADHASAE PALILYGGSA LSLMLFAVMH SNARHRRRMR AAASHLAHSR DEFRTLVENV PGVVFRCQIE PPWRVMHISR GITALTGATP EDFMSGRLSF GDFILHEDVP TIVAAIESAR ISHTNYEVEY RMRGRDRRVH WVSERGRVAV DADDEPLRLD GVIIDITERK AAEEAIRNLA FVDTLTQLPN RRFLLDRLRQ GLANARRHGR HGALLFIDID HFKRVNDTYG HEAGDQLLCE IAARLRQVVR EGDTVARLGG DEFVVMLEDL GDATAEAGEK AALIAGNILA ALNEPYAIGA VRHHSTPSIG IACFDGGEQR AEELLRRADE AMYRAKAGGR NRLETLNAS
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