| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmz1t_1960 |
|---|
| Symbol | |
|---|
| ID | 7084428 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thauera sp. MZ1T |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011662 |
|---|
| Strand | - |
|---|
| Start bp | 2208232 |
|---|
| End bp | 2209338 |
|---|
| Gene Length | 1107 bp |
|---|
| Protein Length | 368 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 643698985 |
|---|
| Product | tRNA (uracil-5-)-methyltransferase |
|---|
| Protein accession | YP_002355607 |
|---|
| Protein GI | 217970373 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
|---|
| TIGRFAM ID | [TIGR02143] tRNA (uracil-5-)-methyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCCCTGC CCTGCATCGA CCCCGCGCGC TACGAGGACC AGCTCGCCGC CAAGCTCGCG
CGCTACCGCA GCGACTTCGC CGAGTTCGAC CTGCCCGAGC CGGCGGTCTT CCGCTCCGCG
CCGCTGCACT ACCGCCTGCG CGCCGAGTTC CGCCTGTGGC ATCACGAGGA CCGCATCGAC
TACGCGATGT TCGACAGCGC GGACCCGAAG CAGCCCATCC TGCTCGAGAC CTTCCCCGCG
GCTGCAGAAC CGATCGCCAA GCTGATGCCG CGCCTGCGCG ACGCGCTCCA GGCCAGCGAG
GCGCTGCGGC GCAAGATCTT CCAGGTCGAC TTCCTCGCCA CCCTGAGCGG CGAGTGCCTG
GTCAGCCTGG TCTACCACCG CCCGCTCGAC GCAGACTGGG AAACCGCCGC GCGCGCGCTC
GCCGCCGCGC TCGACATCCA GGTGATCGGG CGCAGCCGCA AGCAGAAGAT CGTGCTCGAG
CGCGACTGGG TACAGGAGGT GCTCGAGGTC GACGGCCAGC GTCTGCGCTA CCAGCAGTTC
GAGGGCAGCT TCACCCAGCC CAACGGCGGC GTGAACCAGC ACATGCTGGC CTGGGCGCGC
GCGCAGGCGA AGGCCGTGGG CGCGCGTCCG CAAGGCCCGG GTGACCTGCT CGAACTCTAC
TGCGGCAACG GCAACTTCAC CGTGGCGCTG GCGCCGCTGT TCGGCCGCGT GCTCGCGACC
GAGATGAGCA AGACCTCGGT GCGCGCCGCG CACACCAACC TCGCCGACAA CGGCGTCGCC
AACGTCACCA TGGTGCGCAT GGCGAGCGAG GAGATCAGCG ACGCCCTCGC CGGCGGGCGC
GAATACCGCC GCATGCAGGG CGTGGACCTG GCCGGCTACC GCTTCTCCAC GCTCTTCGTG
GACCCGCCGC GCGCCGGCCT CGACGAAGGC ACGATCGCGC TGGCGAAGGG CTTCGAGCAC
ATCCTCTACA TCTCCTGCAA CCCGGAGACC CTGCGCGCCA ACGTCGCCGC GCTGGCGACG
ACGCACCGCA TCGCCGCGGC CGCGGCCTTC GACCAGTTCC CCTACACCCA CCACCTCGAA
TGCGGGCTGC TGCTGCAGCG GCGCTGA
|
|---|
| Protein sequence | MPLPCIDPAR YEDQLAAKLA RYRSDFAEFD LPEPAVFRSA PLHYRLRAEF RLWHHEDRID
YAMFDSADPK QPILLETFPA AAEPIAKLMP RLRDALQASE ALRRKIFQVD FLATLSGECL
VSLVYHRPLD ADWETAARAL AAALDIQVIG RSRKQKIVLE RDWVQEVLEV DGQRLRYQQF
EGSFTQPNGG VNQHMLAWAR AQAKAVGARP QGPGDLLELY CGNGNFTVAL APLFGRVLAT
EMSKTSVRAA HTNLADNGVA NVTMVRMASE EISDALAGGR EYRRMQGVDL AGYRFSTLFV
DPPRAGLDEG TIALAKGFEH ILYISCNPET LRANVAALAT THRIAAAAAF DQFPYTHHLE
CGLLLQRR
|
|---|
| |