| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmz1t_1948 |
|---|
| Symbol | |
|---|
| ID | 7084416 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thauera sp. MZ1T |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011662 |
|---|
| Strand | - |
|---|
| Start bp | 2189236 |
|---|
| End bp | 2192463 |
|---|
| Gene Length | 3228 bp |
|---|
| Protein Length | 1075 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 643698973 |
|---|
| Product | DNA polymerase III, alpha subunit |
|---|
| Protein accession | YP_002355595 |
|---|
| Protein GI | 217970361 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0587] DNA polymerase III, alpha subunit |
|---|
| TIGRFAM ID | [TIGR00594] DNA-directed DNA polymerase III (polc) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTTCCCG CCTACGCCGA ACTCCACTGC CTGAGCAACT TCAGCTTCCA GCGCGGCGCC
TCGCACCCCG AGGAGCTCGT CGCGCAGGCG GCAGCCTTCG GCTACAGCGC GATCGCCCTC
ACCGACGAAT GCTCCTTCGC CGGCGTGGTG CGCGCCCACC GCGCGCTGCA GGCCCTGCCC
GAAGCCGGCC GGCCGCGCCT GATCGTCGGC TGCGAGCTGC GCCTCGCCGA CGGGCCCTGC
CTCGTCCTGC TCGCCGCCGA TCGCGCCGGC TACGGCCGGC TCTCGCGCCT GCTCACCCAG
GCCAGGCGGA GCGCCGACAA GGGCCGCTAC CACCTCACGC GCGCGATGCT CGACGCCACC
CGCGCAGACG AGGCGGCCGC CGAAGCCCTG CCCGGCTGCC TGGCGCTGCT GATCCCACCC
GAGGAATTCC CGCCGCCGGG TGCCGCCGGC GACGCGGCCG TCGCCCTGCG CAGCGAAGCG
CGCTGGCTGG CGAAGCGCTT CCCCGGACGC TCCTGGATCG CCCACACCCC GCGCCTGGAC
GGACGCGATC CCGCCCGCCT GCACTGGATC CTGCGCATCG CCCAGGCCAC CGGCGTCCCT
GCGGTCGCCG CCGGCGGCGC GCTCATGCAC GAGGCCGCGC GGCGCCCGCT CGCCGACGTG
ATGAGCGCGC TGCGCCTGCA CTGCAGCGTG GCCGAGGCCG GCCTGGCGCT CGCGCCCAAT
GCCGAGCTGC GCCTGCACGA GCGCGCGACC CTCGCCCGCC GCCATCCTCC CGAGCTGCTC
GCCGAGACCG TGGCGGTGGC GGCGCGCTGC CGCTTCGACC TCGACGAGCT GCGCTACGAG
TACCCCGCCG AGCTCGTCCC CGCGGACGAG ACCCCGACGC GCTGGCTGCG CCGGCTGGTC
GAGGGCGGGC TGGCCTGGCG CTACGGCAAG GCCGGCAAGG AGCGCCGCGC AGCCGCGCCT
GCCACGATCG CGGCCGCACC GCCACCGGCC GAAGACCCCG CCCCGCCCAC GGTGCGCGCG
CAGATCGAGC ACGAGCTCGC GCTCATCGCC GAGCTCGGCT ACGAGCCCTA CTTCCTCACC
GTGCACGACA TCGTGCGCTT CGCCCGCGAG CGCGGCATCC TGTGCCAGGG CCGCGGCTCG
GCGGCCAACT CGGTGGTGTG CTGGGCACTG GGCATCACCG AGGTCGATCC GCAGCTGGGC
ATCATGCTGG TCGAGCGCTT CATCTCGCGA GAGCGCGACG AGCCGCCCGA CATCGACGTC
GACTTCGAGC ACGAGCGCCG CGAGGAGGTC ATCCAGTACC TCTACCGCAA GTACGGCCGC
GAACGCGCCG CGCTCGCCGC CACCGTGATC CGCTACCGCG CACGCAGCGC GCTGCGCGAC
GTCGGCCGCG CGCTCGGCCT CGACGAGACG CAGATCGAGC GCCTCACCCG CGAGCACCAC
TGGTTCGACG GCCGCCACAT CCTGCCCGAG CGCCTCGCGG AGGCCGGGCT CGACCCCGCC
AGCCCGGTCA CGCAAAGGCT GGTCGCACTC ACCGAGGAAC TCATCGGCTT TCCGCGCCAC
CTCTCCCAGC ACGTCGGCGG CTTCGTCATC GCGCGCGGCC GGCTCGACGA GCTGGTGCCG
GTGGAGAACG CCGCCATGTC CGATCGCACC GTGATCCAGT GGGACAAGGA CGACCTCGAC
GCGGTCGGCC TGATGAAGAT CGACGTGCTC GCGCTCGGCA TGCTGTCGGC GCTGCGTCGC
GGCCTCGCCC TGGTGTCGGC ATGGCGCGGC GAGGCGCTGA CGCTGGCGAC CATCCCGCGC
GAACGAAAGG AGGTCTACGA AATGCTGTCG CGCGCCGATT CGGTCGGCGT GTTCCAGGTC
GAGTCGCGCG CGCAGATGAC CATGCTGCCG CGCCTGAGGC CGCAACGCTT CTACGACCTG
GTGGTGGAAG TCGCGATCGT GCGCCCCGGC CCGATCCAGG GCGGCATGGT CCATCCCTAC
CTGCAGGCGC GCGAGCGTGC GGCGCGCGGC GAGGATCCGT TGGACGGCCT GCGCGAAGAG
ATCCGCGGTG TGCTGGCGCG CACGCTGGGC GTGCCGATCT TCCAGGAGCA GGTGATGCAG
CTCGCGGTGG TCGCGGCCGA CTTTACCGGC GGCGAGGCCG ACCAGCTGCG CCGCGCGATG
GGTGCCTGGC GGCGCAAGGG CGAGCTCGAG CGCTACCGCC AGAAGCTGCT CGACGGGCTG
GCGAACAACG GCTACGACCC CGACTTCGCC CAGCGCCTGT GCCAGCAGAT CGAGGGCTTC
GGCAGCTACG GCTTTCCCGA ATCCCACGCC GCCAGCTTCG CGCTGCTGGT GTATGCCTCG
GCCTGGCTCA AGTGCTTCGC GCCCGCGGCC TTCCTCGCCG CGCTGCTGAA CAGCCAGCCG
ATGGGCTTCT ACGCGCCCGC GCAGCTGATC CAGGACGCCC GCCGCCATGG GGTGGAGGTG
CGCGCGGCGG ACGTCGGCGC CAGCGCGTGG GACTGCATGC TGGAGACCGC CGACGGCGCG
CAGCCCGCGG TGCGCCTCGG CCTGCGCATG ATCCGCGGCC TCGGCCGCGA GGCCGCCACG
CGCATCGCCG CCGCGCGTGG CGAACACGCC TTCGCCGACA CCCGGGACCT CGCCGCGCGC
GCGCGGCTCG ACACCGGCGA GCTGCGCACC CTCGCCGCCG GCGGTGCCCT CGCCAGCCTC
GCCGGTCATC GCCGCCAGGC CCTGTGGCAG GCGAGCGGCG CCGCGCCCCT GCCCGGCCTG
CTCGCCGAAG CCCCTGGCGG CGACGTCGCC GCCACGCTGG ACGCCCCCGC CGAGGCCGAA
GACCTGCTCG CCGACTACGC CCGCCTCGGC TTCACCCTCG GTCGCCACCC GCTCGCCTTC
GTGCGCGAGC AGCTCGCCCG CCTGCGCTTT CTCACCGCCG CCGACATCAC CGCCGCGCCC
GACCGCATGC TCGCCCGCGG CGCCGGCCTG GTCACCTGCC GCCAGCGCCC CGGCACCGCG
AAGGGCACGC TCTTCCTCAC CCTGGAAGAC GAGACCGGGC TCACCAACGT GATCGTCCGC
CCCGAGCTCT TCGAACAGCA GCGCCGCATC CTGCTCGGGG CGCGCCTGAT GGGCGTGTTC
GGCCAGATCC GCCGTCAGGG CCGGGTCGTG CATCTGGTGG CGAGCCGGGT GGTCGACCAC
TCGCCCCTGC TCGGCAGCCT CGCCGCGCGC AGCCGGGATT TTCACTGA
|
|---|
| Protein sequence | MLPAYAELHC LSNFSFQRGA SHPEELVAQA AAFGYSAIAL TDECSFAGVV RAHRALQALP
EAGRPRLIVG CELRLADGPC LVLLAADRAG YGRLSRLLTQ ARRSADKGRY HLTRAMLDAT
RADEAAAEAL PGCLALLIPP EEFPPPGAAG DAAVALRSEA RWLAKRFPGR SWIAHTPRLD
GRDPARLHWI LRIAQATGVP AVAAGGALMH EAARRPLADV MSALRLHCSV AEAGLALAPN
AELRLHERAT LARRHPPELL AETVAVAARC RFDLDELRYE YPAELVPADE TPTRWLRRLV
EGGLAWRYGK AGKERRAAAP ATIAAAPPPA EDPAPPTVRA QIEHELALIA ELGYEPYFLT
VHDIVRFARE RGILCQGRGS AANSVVCWAL GITEVDPQLG IMLVERFISR ERDEPPDIDV
DFEHERREEV IQYLYRKYGR ERAALAATVI RYRARSALRD VGRALGLDET QIERLTREHH
WFDGRHILPE RLAEAGLDPA SPVTQRLVAL TEELIGFPRH LSQHVGGFVI ARGRLDELVP
VENAAMSDRT VIQWDKDDLD AVGLMKIDVL ALGMLSALRR GLALVSAWRG EALTLATIPR
ERKEVYEMLS RADSVGVFQV ESRAQMTMLP RLRPQRFYDL VVEVAIVRPG PIQGGMVHPY
LQARERAARG EDPLDGLREE IRGVLARTLG VPIFQEQVMQ LAVVAADFTG GEADQLRRAM
GAWRRKGELE RYRQKLLDGL ANNGYDPDFA QRLCQQIEGF GSYGFPESHA ASFALLVYAS
AWLKCFAPAA FLAALLNSQP MGFYAPAQLI QDARRHGVEV RAADVGASAW DCMLETADGA
QPAVRLGLRM IRGLGREAAT RIAAARGEHA FADTRDLAAR ARLDTGELRT LAAGGALASL
AGHRRQALWQ ASGAAPLPGL LAEAPGGDVA ATLDAPAEAE DLLADYARLG FTLGRHPLAF
VREQLARLRF LTAADITAAP DRMLARGAGL VTCRQRPGTA KGTLFLTLED ETGLTNVIVR
PELFEQQRRI LLGARLMGVF GQIRRQGRVV HLVASRVVDH SPLLGSLAAR SRDFH
|
|---|
| |