| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmz1t_1732 |
|---|
| Symbol | carB |
|---|
| ID | 7085698 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thauera sp. MZ1T |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011662 |
|---|
| Strand | + |
|---|
| Start bp | 1951572 |
|---|
| End bp | 1954802 |
|---|
| Gene Length | 3231 bp |
|---|
| Protein Length | 1076 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 643698751 |
|---|
| Product | carbamoyl phosphate synthase large subunit |
|---|
| Protein accession | YP_002355381 |
|---|
| Protein GI | 217970147 |
|---|
| COG category | [E] Amino acid transport and metabolism
[F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0458] Carbamoylphosphate synthase large subunit (split gene in MJ) |
|---|
| TIGRFAM ID | [TIGR01369] carbamoyl-phosphate synthase, large subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.215987 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCGAAAC GTACAGACAT CAAGACCATC CTGATCATCG GCGCCGGCCC GATCATCATC
GGCCAGGCCT GCGAGTTCGA CTATTCCGGC GCCCAGGCCT GCAAGGCCCT GCGCGAGGAA
GGCTACAAGG TCATCCTGGT CAACTCGAAC CCGGCGACCA TCATGACCGA CCCGGAGACG
GCCGACGTCA CCTACATCGA ACCGATCACC TGGCAGGTGG TCGAGCGCAT CATCGACAAG
GAGCGTCCCG ACGCGATCCT GCCGACCATG GGCGGCCAGA CCGCGCTCAA CTGCGCGCTC
GACCTCGGTC GCCACGGCGT GCTCGCCAAG TACGGCGTCG AGCTCATCGG CGCTTCGGAA
GAGGCGATCG ACAAGGCGGA GGACCGCCTC AAGTTCAAGG ACGCGATGAC CAGGATCGGT
CTCGGCTCCG CGCGCTCGGG CATCGCCCAC AGCATGGAAG AGGCGCTCCA GGTCCAGGGT
GGCATCGGCT TCCCGGTGAT CATCCGCCCG AGCTTCACGC TCGGCGGCAC CGGCGGCGGC
ATCGCCTACA ACATGGAAGA GTTCCAGGAG ATCTGCAAGC GCGGCCTCGA GGCGAGTCCG
ACCAACGAGC TGCTGATCGA GGAGTCGCTG CTGGGCTGGA AGGAATACGA GATGGAGGTC
GTGCGCGATC GCGCCGACAA CTGCATCATC GTGTGCTCGA TCGAGAACCT CGACCCGATG
GGCGTGCACA CCGGCGACTC GATCACCGTC GCGCCGGCGC AGACGCTCAC CGACAAGGAA
TACCAGATCA TGCGCAACGC CTCGATCGCG GTGCTGCGCG AGATCGGGGT GGACACGGGC
GGCTCGAACG TGCAGTTCGC CATCAATCCC CAGGACGGTC GCATGATCGT CATCGAGATG
AACCCGCGCG TGTCGCGTTC GTCGGCGCTG GCCTCCAAGG CCACCGGTTT CCCGATCGCA
AAGGTCGCGG CCAAGCTGGC GGTGGGCTAC ACCCTCGACG AGCTGCGCAA CGACATCACC
GGTGGCGCCA CCCCGGCGTC CTTCGAGCCT TCGATCGACT ACGTCGTCAC CAAGATCCCG
CGCTTCGCGT TCGAGAAATT CCCCCAGGCC AACGACCGCC TGACCACCCA GATGAAATCG
GTGGGCGAGG TCATGGCGAT GGGCCGCAGC TTCCAGGAAT CCTTCCAGAA GGCGCTGCGT
GGGCTGGAGG TCGGCGTGTA TGGCCTGGAC GAGGTCGAGG CCGACCGCGA GGATCTCGAG
CACGAGATCG CCAGCCCGGG CGCGCAGCGC ATCTGGTACG TGGGCCAGGC TTTCCGCGAG
GGTATGAGCC TCGAGCAGGT TTTCAACCTG TCCAAGATCG ACCCCTGGTT CCTCGCCCAG
ATCGAGGACA TCGTGCTCTC CGAGAAGGCG CTCGCCGGGC GCTCGCTGAA GGCGCTGCAG
GCCGCCGAGC TGCGCGAGCT CAAGAAGAAG GGCTTCTCCG ACCGCCGCCT GGCCAAGCTG
CTCAATGCTG ACGAGACCGC GGTGCGCCTG CATCGGCATA CGCTGGGCGT GCGCCCGGTG
TTCAAGCGCG TCGACACCTG CGCGGCCGAG TTCGCCACCT CCACCGCCTA CCTGTATTCG
TCCTACGAGG ACGAGTGCGA GGCGATGCCG ACCGAGCGCA AGAAGATCAT GGTGCTCGGC
GGTGGTCCCA ACCGCATCGG CCAGGGCATC GAGTTCGACT ACTGCTGCGT GCATGCGGCG
CTCGCCCTGC GCGAGGATGG CTACGAGACC ATCATGGTCA ACTGCAACCC GGAGACGGTG
TCCACCGACT ACGACACCTC GGACCGCCTG TACTTCGAGC CGATCACGCT CGAAGACCTG
CTCGAGATCG TGCACATCGA GAAGCCGGTC GGCGTGATCG TGCAGTTCGG CGGCCAGACT
CCGCTCAAGC GCGCGCAGGC GCTCGAAGCC AACGGCGTGC CGATCATCGG CACCAGCCCC
GACATGATCG ACGCCGCCGA GGACCGCGAG CGTTTCCAGC AACTGCTCGT CGAGCTCGGT
CTGCGTCAGC CGCCCAACCG CACCGCGCGG ACGCCCGCCG AAGCCGTGCG CCTCGCGGCC
GAGATCGGCT ATCCGCTGGT GGTACGCCCG TCCTACGTGC TGGGTGGCCG CGCGATGGAG
ATCGTGCACG AGCAGAAGGA CCTCGAGCGC TACATGCGCG AGGCGGTCAA GGTCTCGAAC
GAGTCGCCGG TGCTGCTCGA CCGCTTCCTC AACGACGCCA CGGAGGTGGA CGTCGATGCG
CTGTCCGACG GCAAGCAGGT GATGATCGGC GGCATCATGG AGCACATCGA GCAGGCCGGC
GTGCATTCGG GCGACTCGGC CTGCTCGCTG CCACCCTATA CCCTGTCGGC GAGGCTGCAG
GACGAGTTGC GCCGCCAGAC CGAGGCCATG GCGCGCGCGC TGAAGGTCGT CGGCCTGATG
AACGTGCAGT TCGCGATCCA GGGCGAGGGC GACAATGCGG TCGTCTATGT GCTCGAGGTG
AACCCGCGCG CCTCGCGCAC CGTGCCCTTC GTCTCCAAGG CCTGCTCGCT GCCGCTGGCC
AAGATCGCCG CGCGCTGCAT GGCGGGTCAG AGCCTGGCCG AGCAGGGCGT CAGCGGTGAG
ATCGTTCCGC CTTACTACTC GGTCAAGGAG GCGGTGTTCC CGTTCGTGAA GTTCCCCGGC
GTGGATACCA TCCTCGGGCC CGAGATGAAG TCCACCGGCG AGGTCATGGG CGTGGGCCGC
AGCTTCGCCG AGGCCTTCGT GAAGAGCCAG ATGGGCGCGG GCGTGCGCCT GCCAACCGCG
GGCACGGTGT TCATCAGCGT GCGTCCGACC GACAAGCCGG TCGCGATCGA GGTCGCGCGC
GAGCTGCACG AGATGGGCTT CGCGCTGGTG GCCACCCGCG GCACCGCAGC GGCGATCGAG
GCCGCCGGGA TCCCGGTGGG CGTGGTCAAC AAGGTCAACG AGGGCCGTCC GCACATCGTC
GACATCATCA AGAACGAGGA GATCGTGCTG GTGATCAACA CCGTCGACGA GAAGCGCCAG
GCGATCGCTG ACTCGCGCTC GATCCGCACC AGCGCGCTCG CCGCAAAGGT GTCGATCTTC
ACCACCATCG AGGGCGCGCG CGCCGCGTGC ATGGGCATGC GCCACCTTTC GAACGGTCTC
GAGGTGTATT CCGTGCAGGG CCTGCACGCC GAACTGAAGC AGCAAGCATG A
|
|---|
| Protein sequence | MPKRTDIKTI LIIGAGPIII GQACEFDYSG AQACKALREE GYKVILVNSN PATIMTDPET
ADVTYIEPIT WQVVERIIDK ERPDAILPTM GGQTALNCAL DLGRHGVLAK YGVELIGASE
EAIDKAEDRL KFKDAMTRIG LGSARSGIAH SMEEALQVQG GIGFPVIIRP SFTLGGTGGG
IAYNMEEFQE ICKRGLEASP TNELLIEESL LGWKEYEMEV VRDRADNCII VCSIENLDPM
GVHTGDSITV APAQTLTDKE YQIMRNASIA VLREIGVDTG GSNVQFAINP QDGRMIVIEM
NPRVSRSSAL ASKATGFPIA KVAAKLAVGY TLDELRNDIT GGATPASFEP SIDYVVTKIP
RFAFEKFPQA NDRLTTQMKS VGEVMAMGRS FQESFQKALR GLEVGVYGLD EVEADREDLE
HEIASPGAQR IWYVGQAFRE GMSLEQVFNL SKIDPWFLAQ IEDIVLSEKA LAGRSLKALQ
AAELRELKKK GFSDRRLAKL LNADETAVRL HRHTLGVRPV FKRVDTCAAE FATSTAYLYS
SYEDECEAMP TERKKIMVLG GGPNRIGQGI EFDYCCVHAA LALREDGYET IMVNCNPETV
STDYDTSDRL YFEPITLEDL LEIVHIEKPV GVIVQFGGQT PLKRAQALEA NGVPIIGTSP
DMIDAAEDRE RFQQLLVELG LRQPPNRTAR TPAEAVRLAA EIGYPLVVRP SYVLGGRAME
IVHEQKDLER YMREAVKVSN ESPVLLDRFL NDATEVDVDA LSDGKQVMIG GIMEHIEQAG
VHSGDSACSL PPYTLSARLQ DELRRQTEAM ARALKVVGLM NVQFAIQGEG DNAVVYVLEV
NPRASRTVPF VSKACSLPLA KIAARCMAGQ SLAEQGVSGE IVPPYYSVKE AVFPFVKFPG
VDTILGPEMK STGEVMGVGR SFAEAFVKSQ MGAGVRLPTA GTVFISVRPT DKPVAIEVAR
ELHEMGFALV ATRGTAAAIE AAGIPVGVVN KVNEGRPHIV DIIKNEEIVL VINTVDEKRQ
AIADSRSIRT SALAAKVSIF TTIEGARAAC MGMRHLSNGL EVYSVQGLHA ELKQQA
|
|---|
| |