Gene Tmz1t_1679 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTmz1t_1679 
Symbol 
ID7084099 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThauera sp. MZ1T 
KingdomBacteria 
Replicon accessionNC_011662 
Strand
Start bp1882894 
End bp1886046 
Gene Length3153 bp 
Protein Length1050 aa 
Translation table11 
GC content71% 
IMG OID643698700 
Productdiguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 
Protein accessionYP_002355330 
Protein GI217970096 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.251418 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCGACGAC TCCTCCGCAC CGTCGTCCTG CTGGTCTGCC TGAGCCTCGG CAGCGCGGCT 
CTGCACGCCC GGACGGATCT CGATTTCGGC GTCTATTCGG CGCGCCCGAA GGCGCTCGTC
GAGGCCTCGT GGCAGCCCTT CGTGGACTAC CTGAACCAGC ACCTGGACGG CGTCGAGGTA
CGCCTGCACG CGCTCGACGA CGCCGGACTG CAGCGCGCCC TCGCCGCCGG CGAGATCGAT
CTGCTGCTGA CCAACCCGGT GCATTTCATC GAGCTGCGCG CATCCAATCC GCTCTCCGGT
GCCATCGCCA CCGTGGTCGC CGATGCCGGC GGCCAGGCCC TGAGCGAGTT CGGCGGCGTG
ATCCTGGTGC GCGCCGCGGA CGCCAGCCTG AAGACCCTCG CCGACCTGCG GGGCAGGCGC
GTCGGCACCA CCCATGCCAA CTTCCTCGCC ACCTATCCGG CGCAGGCACT CGAGATGAAG
GCCGCCGGCA TCGACCCCGG CTCGCTGCGC ATGTTCACGC TGCGGCAGAC CCAGGACAGC
GTCGTCGAAG CGGTACTCGA CGGCCGCGTC GACGCCGGCT TCGTCCGCAC CGGCCTCTTC
GAGGCGCTCG TCGCCGAGGG GCGCGACCTC TCCGGCTTGC GTGTGCTGCA TCCCCTGCAG
CATCCGGGCT TCCCGCTGCG CAGTTCCACA CGCCTCTACC CCGAATGGCC CCTCGTCGCC
CTTCGTCAGG CCGACCCGGC CCTGATGCGC AAGGTGGCGG CACTCGCGCT CGGCCTCGAA
ACCGCCGACC CGGCCGCGCG CGCCGCAGGC ATCCACGGCT TCACCATCCC CGCCGATTAC
GCCCGCGTCG AGGAGATGCT GCGCGAACTG CGCCTGCCGC CCTTCGACGC CACTCCACCC
TTTACCTGGA ACGACGTGTG GGCGCGCTAC CACGAGACGA TCTTCGTACT CGGCCTCGCG
ACCCTGGCGA TCGTGCTGCT GCTGGTGCGT CTGGCGCAGC GCAACCTGGC GCTGTCGCAG
GCCAACGCCG CCGCGCGCCG CCTGGCAGCA GAGATCGAAC TCGATCGCCA CCACCTGCGC
AACGTGATCG AGGCCACCCA GGCCGGCAGC TGGGAATGGA ATCTGGAGAC CGGCGAGTGG
AAGATGGACG CACGCTGGGC GGCGATGCTC GGGCTGGCGG CGGAGGACTG CGACGGCGAA
GGGCGCGCGT GCTGGCGCAA GCGCGTGCAT CCCGCCGACC TCGCCGAGGC CGAGCGCGAG
CTCGATCGCC ACATCCGCGG CGAGACCGCC TTCTACGAGC ACGACCTGCG CCTGCGCCAT
TGCGACGGAC GCTGGATCTG GGTGTATGAC CGCGCGCTCG CCGTGCGCCG CGACGCGGAC
GGGCGCGCGC TGCTGCTGAC CGGCGCGCAG ATCGACATCG ATCGGCGCAA GGAGAACGAG
GAGCGCCTGC GCCTGGCCGC GAGCGTGTTC TCGTCGAGCT ACGAGGCGAT CCTGATCACC
GACGTCGACA ACCGCATCGT CGACGTCAAC CCGGCCTTCT GCCGCATCAC CGGCTACAGC
CGCGAGGAGA GCCTCGGCCG CGACCCCGGC ATGCTCGCCT CGGGCCGCCA GGGGCGCGAG
TTCTACCGTG CGATGTGGCA GGCGATCGAA GAGCACGACC ACTGGCAGGG CGAACTGTGG
AACCGGCGCA AGGACGGCAG CGAGTTCGCC GAGGTGCTCT CGATCAGCCG CGTGCGCGAC
GCACGCGGTC GGGTGATCCA CCATCTGGCG ATGTTCTCCG ACATCAGCCG GCTCAAGAAG
CATGAGGAGG AGCTCAACCG CATCGCCTAC TTCGACCCGC TCACCGGCGC ACCCAACCGC
CGCCTGCTCG ACGACCGCCT GCGCCAGGCG ATCGCACACT CTCGGCGCAC AGGGAAGCCG
CTCGCGGTCT GCGTGATCGA CCTCGACGGC TTCAAGCCGG TGAACGATCA GCTCGGCCAC
GAGGCCGGCG ACCAGGTGCT GATCGGCATC GTCGACCGGC TCGGCGCGAT CCTGCGCGCC
AGCGACACCG TGGCCCGCCT CGGCGGCGAC GAGTTCGTGC TGCTGCTCGA GGACATCGAA
GGCGAGCGCG TGCTCGAGCG CGTGCTCGAA GCCATCCGCA CGCCGATTGC GCTCGCCAGC
CAGCAGGTAT GCGTGTCCGC GAGCATCGGC GTCACCCTCT TCCCCGAGGA CGACGCCGAC
CCCGACACCC TGCTGCGCCA CGCCGACCAG GCGATGTACC GCGCCAAGCA GCGCGGACGC
AACTGCATCC AGTTCTTCGA CGCCAGCGTC GAGGAACAGC AGCGCGTGCG CAAGGAACGC
CTCGAGCGCC TCGACCAGGC CTTGCGCCGG CAGGAGTTCG TGCTGCACTT CCAGCCCCAG
GTCGACATGG TCGACGGGCG GCCACTCGGC ATGGAGGCCC TGCTGCGCTG GCAGCACCCC
GAGCGCGGCC TGCTGGCGCC GGGCGAGTTC CTGCCCGACC TCGAAGGCAC CGAGCTGGAG
ACCCGGCTCG GTCAGTGGGT GGTCGACCAC GCGCTCGGCG CCCTCGAGCG CTGCCGCGCG
GCCGGGCTGG ACATCGGGGT AAGCGTCAAC GTCGGTCCCG GTCCGCTGAT GCAGGCGGGC
TTCGTCGCCA GCGTGCGCAG CGCGCTGGAG CGCCACCCCG ACATCCCGCC CGAGCGCCTG
GAGCTCGAGA TCCTCGAATC CACTGCGCTC GACGACATGG TGCTGGCGAT GGACGTGCTC
GAGGCCTGCC ATCGCCTCGG CGTACGCATC GCGCTCGACG ACTTCGGCAC CGGCTACGCC
TCGCTGCGCC ACTTCCGCCA GCTGCCCTTC GACCGCCTCA AGATCGACCG CAGCTTCGTG
CTCGACATGC TGGAGGACGG CGAGGCGCGC GCGATCGTCG GCGCCGTGGT GCAGCTCGCG
CGCACCTTCG GCCGCGAGGT GATCGCCGAA GGCGTGGAGA CGCCCGCCCA CGCAGCGGCC
CTGCTTGCCC TCGGCTGCAG GCTCGGCCAG GGCTTCGGCA TCGCCCGGCC GATGCCGGTC
GAGCACATCC CCGGCTGGGT TTCATGGCAG ACTCTCGCAC CCTGCGCCGA CGATACGGCA
TGCGCGAGCT CCGGCCGCTG CCCGCCAATC TGA
 
Protein sequence
MRRLLRTVVL LVCLSLGSAA LHARTDLDFG VYSARPKALV EASWQPFVDY LNQHLDGVEV 
RLHALDDAGL QRALAAGEID LLLTNPVHFI ELRASNPLSG AIATVVADAG GQALSEFGGV
ILVRAADASL KTLADLRGRR VGTTHANFLA TYPAQALEMK AAGIDPGSLR MFTLRQTQDS
VVEAVLDGRV DAGFVRTGLF EALVAEGRDL SGLRVLHPLQ HPGFPLRSST RLYPEWPLVA
LRQADPALMR KVAALALGLE TADPAARAAG IHGFTIPADY ARVEEMLREL RLPPFDATPP
FTWNDVWARY HETIFVLGLA TLAIVLLLVR LAQRNLALSQ ANAAARRLAA EIELDRHHLR
NVIEATQAGS WEWNLETGEW KMDARWAAML GLAAEDCDGE GRACWRKRVH PADLAEAERE
LDRHIRGETA FYEHDLRLRH CDGRWIWVYD RALAVRRDAD GRALLLTGAQ IDIDRRKENE
ERLRLAASVF SSSYEAILIT DVDNRIVDVN PAFCRITGYS REESLGRDPG MLASGRQGRE
FYRAMWQAIE EHDHWQGELW NRRKDGSEFA EVLSISRVRD ARGRVIHHLA MFSDISRLKK
HEEELNRIAY FDPLTGAPNR RLLDDRLRQA IAHSRRTGKP LAVCVIDLDG FKPVNDQLGH
EAGDQVLIGI VDRLGAILRA SDTVARLGGD EFVLLLEDIE GERVLERVLE AIRTPIALAS
QQVCVSASIG VTLFPEDDAD PDTLLRHADQ AMYRAKQRGR NCIQFFDASV EEQQRVRKER
LERLDQALRR QEFVLHFQPQ VDMVDGRPLG MEALLRWQHP ERGLLAPGEF LPDLEGTELE
TRLGQWVVDH ALGALERCRA AGLDIGVSVN VGPGPLMQAG FVASVRSALE RHPDIPPERL
ELEILESTAL DDMVLAMDVL EACHRLGVRI ALDDFGTGYA SLRHFRQLPF DRLKIDRSFV
LDMLEDGEAR AIVGAVVQLA RTFGREVIAE GVETPAHAAA LLALGCRLGQ GFGIARPMPV
EHIPGWVSWQ TLAPCADDTA CASSGRCPPI