Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tmz1t_1679 |
Symbol | |
ID | 7084099 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thauera sp. MZ1T |
Kingdom | Bacteria |
Replicon accession | NC_011662 |
Strand | - |
Start bp | 1882894 |
End bp | 1886046 |
Gene Length | 3153 bp |
Protein Length | 1050 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 643698700 |
Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
Protein accession | YP_002355330 |
Protein GI | 217970096 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.251418 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCGACGAC TCCTCCGCAC CGTCGTCCTG CTGGTCTGCC TGAGCCTCGG CAGCGCGGCT CTGCACGCCC GGACGGATCT CGATTTCGGC GTCTATTCGG CGCGCCCGAA GGCGCTCGTC GAGGCCTCGT GGCAGCCCTT CGTGGACTAC CTGAACCAGC ACCTGGACGG CGTCGAGGTA CGCCTGCACG CGCTCGACGA CGCCGGACTG CAGCGCGCCC TCGCCGCCGG CGAGATCGAT CTGCTGCTGA CCAACCCGGT GCATTTCATC GAGCTGCGCG CATCCAATCC GCTCTCCGGT GCCATCGCCA CCGTGGTCGC CGATGCCGGC GGCCAGGCCC TGAGCGAGTT CGGCGGCGTG ATCCTGGTGC GCGCCGCGGA CGCCAGCCTG AAGACCCTCG CCGACCTGCG GGGCAGGCGC GTCGGCACCA CCCATGCCAA CTTCCTCGCC ACCTATCCGG CGCAGGCACT CGAGATGAAG GCCGCCGGCA TCGACCCCGG CTCGCTGCGC ATGTTCACGC TGCGGCAGAC CCAGGACAGC GTCGTCGAAG CGGTACTCGA CGGCCGCGTC GACGCCGGCT TCGTCCGCAC CGGCCTCTTC GAGGCGCTCG TCGCCGAGGG GCGCGACCTC TCCGGCTTGC GTGTGCTGCA TCCCCTGCAG CATCCGGGCT TCCCGCTGCG CAGTTCCACA CGCCTCTACC CCGAATGGCC CCTCGTCGCC CTTCGTCAGG CCGACCCGGC CCTGATGCGC AAGGTGGCGG CACTCGCGCT CGGCCTCGAA ACCGCCGACC CGGCCGCGCG CGCCGCAGGC ATCCACGGCT TCACCATCCC CGCCGATTAC GCCCGCGTCG AGGAGATGCT GCGCGAACTG CGCCTGCCGC CCTTCGACGC CACTCCACCC TTTACCTGGA ACGACGTGTG GGCGCGCTAC CACGAGACGA TCTTCGTACT CGGCCTCGCG ACCCTGGCGA TCGTGCTGCT GCTGGTGCGT CTGGCGCAGC GCAACCTGGC GCTGTCGCAG GCCAACGCCG CCGCGCGCCG CCTGGCAGCA GAGATCGAAC TCGATCGCCA CCACCTGCGC AACGTGATCG AGGCCACCCA GGCCGGCAGC TGGGAATGGA ATCTGGAGAC CGGCGAGTGG AAGATGGACG CACGCTGGGC GGCGATGCTC GGGCTGGCGG CGGAGGACTG CGACGGCGAA GGGCGCGCGT GCTGGCGCAA GCGCGTGCAT CCCGCCGACC TCGCCGAGGC CGAGCGCGAG CTCGATCGCC ACATCCGCGG CGAGACCGCC TTCTACGAGC ACGACCTGCG CCTGCGCCAT TGCGACGGAC GCTGGATCTG GGTGTATGAC CGCGCGCTCG CCGTGCGCCG CGACGCGGAC GGGCGCGCGC TGCTGCTGAC CGGCGCGCAG ATCGACATCG ATCGGCGCAA GGAGAACGAG GAGCGCCTGC GCCTGGCCGC GAGCGTGTTC TCGTCGAGCT ACGAGGCGAT CCTGATCACC GACGTCGACA ACCGCATCGT CGACGTCAAC CCGGCCTTCT GCCGCATCAC CGGCTACAGC CGCGAGGAGA GCCTCGGCCG CGACCCCGGC ATGCTCGCCT CGGGCCGCCA GGGGCGCGAG TTCTACCGTG CGATGTGGCA GGCGATCGAA GAGCACGACC ACTGGCAGGG CGAACTGTGG AACCGGCGCA AGGACGGCAG CGAGTTCGCC GAGGTGCTCT CGATCAGCCG CGTGCGCGAC GCACGCGGTC GGGTGATCCA CCATCTGGCG ATGTTCTCCG ACATCAGCCG GCTCAAGAAG CATGAGGAGG AGCTCAACCG CATCGCCTAC TTCGACCCGC TCACCGGCGC ACCCAACCGC CGCCTGCTCG ACGACCGCCT GCGCCAGGCG ATCGCACACT CTCGGCGCAC AGGGAAGCCG CTCGCGGTCT GCGTGATCGA CCTCGACGGC TTCAAGCCGG TGAACGATCA GCTCGGCCAC GAGGCCGGCG ACCAGGTGCT GATCGGCATC GTCGACCGGC TCGGCGCGAT CCTGCGCGCC AGCGACACCG TGGCCCGCCT CGGCGGCGAC GAGTTCGTGC TGCTGCTCGA GGACATCGAA GGCGAGCGCG TGCTCGAGCG CGTGCTCGAA GCCATCCGCA CGCCGATTGC GCTCGCCAGC CAGCAGGTAT GCGTGTCCGC GAGCATCGGC GTCACCCTCT TCCCCGAGGA CGACGCCGAC CCCGACACCC TGCTGCGCCA CGCCGACCAG GCGATGTACC GCGCCAAGCA GCGCGGACGC AACTGCATCC AGTTCTTCGA CGCCAGCGTC GAGGAACAGC AGCGCGTGCG CAAGGAACGC CTCGAGCGCC TCGACCAGGC CTTGCGCCGG CAGGAGTTCG TGCTGCACTT CCAGCCCCAG GTCGACATGG TCGACGGGCG GCCACTCGGC ATGGAGGCCC TGCTGCGCTG GCAGCACCCC GAGCGCGGCC TGCTGGCGCC GGGCGAGTTC CTGCCCGACC TCGAAGGCAC CGAGCTGGAG ACCCGGCTCG GTCAGTGGGT GGTCGACCAC GCGCTCGGCG CCCTCGAGCG CTGCCGCGCG GCCGGGCTGG ACATCGGGGT AAGCGTCAAC GTCGGTCCCG GTCCGCTGAT GCAGGCGGGC TTCGTCGCCA GCGTGCGCAG CGCGCTGGAG CGCCACCCCG ACATCCCGCC CGAGCGCCTG GAGCTCGAGA TCCTCGAATC CACTGCGCTC GACGACATGG TGCTGGCGAT GGACGTGCTC GAGGCCTGCC ATCGCCTCGG CGTACGCATC GCGCTCGACG ACTTCGGCAC CGGCTACGCC TCGCTGCGCC ACTTCCGCCA GCTGCCCTTC GACCGCCTCA AGATCGACCG CAGCTTCGTG CTCGACATGC TGGAGGACGG CGAGGCGCGC GCGATCGTCG GCGCCGTGGT GCAGCTCGCG CGCACCTTCG GCCGCGAGGT GATCGCCGAA GGCGTGGAGA CGCCCGCCCA CGCAGCGGCC CTGCTTGCCC TCGGCTGCAG GCTCGGCCAG GGCTTCGGCA TCGCCCGGCC GATGCCGGTC GAGCACATCC CCGGCTGGGT TTCATGGCAG ACTCTCGCAC CCTGCGCCGA CGATACGGCA TGCGCGAGCT CCGGCCGCTG CCCGCCAATC TGA
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Protein sequence | MRRLLRTVVL LVCLSLGSAA LHARTDLDFG VYSARPKALV EASWQPFVDY LNQHLDGVEV RLHALDDAGL QRALAAGEID LLLTNPVHFI ELRASNPLSG AIATVVADAG GQALSEFGGV ILVRAADASL KTLADLRGRR VGTTHANFLA TYPAQALEMK AAGIDPGSLR MFTLRQTQDS VVEAVLDGRV DAGFVRTGLF EALVAEGRDL SGLRVLHPLQ HPGFPLRSST RLYPEWPLVA LRQADPALMR KVAALALGLE TADPAARAAG IHGFTIPADY ARVEEMLREL RLPPFDATPP FTWNDVWARY HETIFVLGLA TLAIVLLLVR LAQRNLALSQ ANAAARRLAA EIELDRHHLR NVIEATQAGS WEWNLETGEW KMDARWAAML GLAAEDCDGE GRACWRKRVH PADLAEAERE LDRHIRGETA FYEHDLRLRH CDGRWIWVYD RALAVRRDAD GRALLLTGAQ IDIDRRKENE ERLRLAASVF SSSYEAILIT DVDNRIVDVN PAFCRITGYS REESLGRDPG MLASGRQGRE FYRAMWQAIE EHDHWQGELW NRRKDGSEFA EVLSISRVRD ARGRVIHHLA MFSDISRLKK HEEELNRIAY FDPLTGAPNR RLLDDRLRQA IAHSRRTGKP LAVCVIDLDG FKPVNDQLGH EAGDQVLIGI VDRLGAILRA SDTVARLGGD EFVLLLEDIE GERVLERVLE AIRTPIALAS QQVCVSASIG VTLFPEDDAD PDTLLRHADQ AMYRAKQRGR NCIQFFDASV EEQQRVRKER LERLDQALRR QEFVLHFQPQ VDMVDGRPLG MEALLRWQHP ERGLLAPGEF LPDLEGTELE TRLGQWVVDH ALGALERCRA AGLDIGVSVN VGPGPLMQAG FVASVRSALE RHPDIPPERL ELEILESTAL DDMVLAMDVL EACHRLGVRI ALDDFGTGYA SLRHFRQLPF DRLKIDRSFV LDMLEDGEAR AIVGAVVQLA RTFGREVIAE GVETPAHAAA LLALGCRLGQ GFGIARPMPV EHIPGWVSWQ TLAPCADDTA CASSGRCPPI
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