| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmz1t_1517 |
|---|
| Symbol | |
|---|
| ID | 7083599 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thauera sp. MZ1T |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011662 |
|---|
| Strand | + |
|---|
| Start bp | 1695128 |
|---|
| End bp | 1696276 |
|---|
| Gene Length | 1149 bp |
|---|
| Protein Length | 382 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 643698534 |
|---|
| Product | Extracellular ligand-binding receptor |
|---|
| Protein accession | YP_002355171 |
|---|
| Protein GI | 217969937 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.702531 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGTTGC GTAACACCCT GCTGGCCGCC CTCGGCCTCG CCTTCGCCGC CACTGCCGCC
CATGCCGAGA TCAAGGTCGG TGTCGTGCTC TCGGCCACCG GCCCCGCCGC TTCGCTGGGT
ATCCCGGAAA AGAACACGAT CGCGCTGCTG CCGGCCACCA TCGGCGGCGA AAAGGTGAGC
TACATCGTGC TCGACGACGC CTCCGACACC ACCACGGCGG TCAAGAACGC CCGCAAGCTG
ACCGTCGAGG ACGGCGTCGA TGTGATCATC GGCTCCACCA CCAGCCCCGC TTCGCTGGCC
ATGGTCGACG TCGCCGCCGA GACGAAGACG CCGATGATCT CGATGGCCGC GTCGGCGCGC
ATCGTCGCGC CGATGGACGA CAAGAAGCGC TGGGTCTTCA AGACCCCCCA GAACGACCAG
CAGATGGCGT CGGCGATCGT CGAGCACATG GTCGCCAACA AGGTGAAGAA GGTGTCCTTC
ATCGGCTTCG CCAACGCCTA CGGCGAGGGC TGGTACGAGC AGTTCAAGAA GCTGGCCGAA
GCCAAGGGCA TCGAGATCGC CGCCAGCGAG CGCTTCAACC CGGCCGACAC CTCGGTGACC
GGCCAGGCGC TCAAGCTGAT GTCGGTGAAG CCGGACGCGG TGTTCATCGC CGGCTCGGGC
ACGCCCTCGG CGCTGCCGCA GAAGACGCTG CGCGAGCGCG GCTACAAGGG GCCGATCTAC
CAGACCCACG GCGTGGCCAA CAACGACTTC CTGCGCATCT GCGGCAAGGA CTGCGAAGGC
ACGCTGCTGC CGGTCGGCCC GGTGCAGATG GCGCGCAGCC TGCCCGACAG CCACCCCGTC
AAGGCGAGCG CGCTGGCCTA CGTGGAGAAG TACGAGGCCG CCAACGGCGC GGGCTCGGTG
TCGAGCTTCG GGGCCTACGC GTGGGACGCC GGGGTGTTGC TGCAGGCGGC CGTCCCTGCC
GCGCTCAAGG CGGCCAAGCC GGGCTCGGCG GAGTTCCGCA CGGCGCTGCG CGATGCGCTC
GAGGGCGTGA AGGAAGTCGC CGGCGCCACC GGCATCTACA CGATGAGCCC CGACGATCAC
CTCGGCCTGG ACGACCGCTC GCGCGTGATG ATCGAGATCC GCAACGGCAC CTGGTCGCTG
CTGAAGTAA
|
|---|
| Protein sequence | MKLRNTLLAA LGLAFAATAA HAEIKVGVVL SATGPAASLG IPEKNTIALL PATIGGEKVS
YIVLDDASDT TTAVKNARKL TVEDGVDVII GSTTSPASLA MVDVAAETKT PMISMAASAR
IVAPMDDKKR WVFKTPQNDQ QMASAIVEHM VANKVKKVSF IGFANAYGEG WYEQFKKLAE
AKGIEIAASE RFNPADTSVT GQALKLMSVK PDAVFIAGSG TPSALPQKTL RERGYKGPIY
QTHGVANNDF LRICGKDCEG TLLPVGPVQM ARSLPDSHPV KASALAYVEK YEAANGAGSV
SSFGAYAWDA GVLLQAAVPA ALKAAKPGSA EFRTALRDAL EGVKEVAGAT GIYTMSPDDH
LGLDDRSRVM IEIRNGTWSL LK
|
|---|
| |