Gene Tmz1t_1477 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTmz1t_1477 
Symbol 
ID7083560 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThauera sp. MZ1T 
KingdomBacteria 
Replicon accessionNC_011662 
Strand
Start bp1645403 
End bp1646791 
Gene Length1389 bp 
Protein Length462 aa 
Translation table11 
GC content66% 
IMG OID643698495 
ProductCarbohydrate-selective porin OprB 
Protein accessionYP_002355132 
Protein GI217969898 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3659] Carbohydrate-selective porin 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGAAAA CCCTTGGACT CGGCGCCTTG ATCTCCGCGC TCGGCACGTC CATGCCGCTG 
CAGGCCATGC CCTACGACAC GCCCGACACC TGGGGCGGCG ATCTCGAATC CCGCGCCCGC
CTGACCGGCA ACTGGGGCGG TGCGCGCGAC GACATGGCGA AGAAGGGGGT CGTCCTCGAC
ATGGACGTGT ACTGGATGCC GCAGAAGATC ACCAGCGGCG GGCGCGACAG CGCCAGCGGC
GACTGGGGCA ACGCGATCCT CACCCTCAAC GTGGATACGC AGAAGCTGGG GCTGTGGCCC
GGCGGCTTCT TCAAGCTCCA GACCGTGACC AGCTTCGGCG ACACGCTGCT GAAGGAAACC
GGCGCCATCG TGCCGGCCAA CCTGTCGTGG ATGCTGCCGA CCATCACCCC GGACACCGGC
GTGCAGGAGA TCACCTACAC GCAGTTCCTC AGCCAGCATT TCGGCGTGTT CCTGGGCAAG
ATCAACGCCA TCGCGCCGAC CAACGTGCTG CATGGCGACT ACACCACCGG CTTCCAGAAC
ACGGGCATAA ACATGCCACT CGCGCTCGCC ATGGTTCCGC TGTCGGCGTA TGGGATCGGC
GCGCTGTACC TGCCCTCGCA CGACGTGACG CTGGCCGGCA TGGTGCTGGA TGCGAACGGC
ACGATCAAGA ACGACAACCT GAGCAATGCC TTCGACGACG GCATCATGGC GCTCGCCAGC
GCGGACCTGA AGATCCGGCC CTGGGGCCTC CCGGGCCACC AGAACCTGAC CGTCGCCTGG
AGCAACAAGG ACCGCACCTC GCTCGTCCAG GATCCGTCCA ACATCGCCGG ACTTCTGCTC
ACCGCGCACT TCCCGCGCCT CGGCAACCCC GGCCCGATCC TCAGCGAGAT CCTCGACGCG
CATCCCGTGG CCGCCAAGAT TCCCCCCGAC CCCTTGAACA AGGAAAGCGA AACCTGGGCC
GCCGTCTACA GCTTCGAACA GTTCGTCTGG CAGCCCGCGG GTGACCCGAA GCGCGGCATC
GGCACCTTCT TCAGCGTCGG CGTAAGTGAC GGCAAGGCGA ACCCGATCCG CTACAGCTAC
TCGCTCGGGC TGGTCGGCAA GGGCGTGGTG CCGGGCCGGC CGAACGACGA CTTCGGCCTC
GGCTGGGCGC GCACCGAGTT CAGCGACCAC TTCGTGCCCT ACCTGCGCGA TCGCTTCAAC
CTCGGCCTCG ATCACGAAGA CGTCGTCGAG CTGTACTACA AGGCCTCGAT CACCCCCTGG
CTGAGCATCA CTCCCAGCCT GCAGGTCGTC TCCCAAGGGC TGAACAAGGT GTTCAACGCG
AGCGCACCCG GCTTCGAAGA CCTGGACACC GCCTACATCG CAGGCGTGCG GGTCGGCGTA
CGCTTCTGA
 
Protein sequence
MKKTLGLGAL ISALGTSMPL QAMPYDTPDT WGGDLESRAR LTGNWGGARD DMAKKGVVLD 
MDVYWMPQKI TSGGRDSASG DWGNAILTLN VDTQKLGLWP GGFFKLQTVT SFGDTLLKET
GAIVPANLSW MLPTITPDTG VQEITYTQFL SQHFGVFLGK INAIAPTNVL HGDYTTGFQN
TGINMPLALA MVPLSAYGIG ALYLPSHDVT LAGMVLDANG TIKNDNLSNA FDDGIMALAS
ADLKIRPWGL PGHQNLTVAW SNKDRTSLVQ DPSNIAGLLL TAHFPRLGNP GPILSEILDA
HPVAAKIPPD PLNKESETWA AVYSFEQFVW QPAGDPKRGI GTFFSVGVSD GKANPIRYSY
SLGLVGKGVV PGRPNDDFGL GWARTEFSDH FVPYLRDRFN LGLDHEDVVE LYYKASITPW
LSITPSLQVV SQGLNKVFNA SAPGFEDLDT AYIAGVRVGV RF