| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmz1t_1408 |
|---|
| Symbol | |
|---|
| ID | 7083490 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thauera sp. MZ1T |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011662 |
|---|
| Strand | - |
|---|
| Start bp | 1566252 |
|---|
| End bp | 1567520 |
|---|
| Gene Length | 1269 bp |
|---|
| Protein Length | 422 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 643698425 |
|---|
| Product | D-amino-acid dehydrogenase |
|---|
| Protein accession | YP_002355063 |
|---|
| Protein GI | 217969829 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCACGTCA TGGTTCTCGG CGCCGGCCTG TCCGGCGTCA CGACCGCCTG GTACCTGACC
CGCGCCGGCT TCCAGGTCAG CCTGGTCGAC CGCCAGCCCG GCGCCGGACT GGAGACCAGC
TTCGCCAACG GCGGGCAGAT CTCGATCAGC CATCCCGAGC CCTGGGCCAA CCCCGGCGCA
CCCGCGCAGG TGCTGCGCTG GCTCGGACGC GCGGACGCGC CGCTGAAGTT CCGCCCGCAC
CGCGCCCTTG CGCAGTGGAC CTGGGGCCTG CGTTTCCTGC TCGAATGCCT GCCCGCACGG
GCGCACCGCA ACACCGTCGC GATCGCCGCG CTCGCGCTCG CCAGCGGGCA GCGACTGCGT
GCGCTGCGCG CCGAACTCGG CCTCGAATAC GACCAGCTCG AGCGCGGCAT CCTGCACCTG
TTCTACAGCC GCGGGGAGTT CGCCAAGGCC CCCGCGCGCG CTGCGCAGCT GCGCGCCTTC
GGTATCGCGG CCGAGGTGCT GGACCGCGAT GCCTGCCTGG AACGCGAGCC CGCGCTGGCC
ACGTGCGCCG GCAGCCTGGC CGGCGGGATC TTCGCCCAGG GCGACGAATC GGGCGACGCG
CACAAGTTCA CCCGCGCGCT CGCGCACAGG CTGGAAGAAG GTGGTGTGGT CCTGCACCGG
GAGACCGAGG TGAGCGCGCT CGAGACCGGA TCCGGCGGCC GGGTCGTGGG CGCGCGCGTG
CGCCGCGCGG ACGGCAGCGT CGACAGCCTG CGCGCGGACG CCTGCGTGCT CTGCCTGGGC
AGCCACGGCC CGCGCCTCGC CGCGCCGCTC GGCTTGCGGC TGCCGATCTA CCCGGTCAAG
GGCTACTCGA TCACCGCACC GGTACTCGAG CCCGCGCTCG CACCCTACGT GAGCCTGACC
GACGAGTCGC GCCGGATCGT GTGCTCGCGC CTGGGCGACC GCCTGCGCGT CGCCGGCACG
GCGGAACTCG ACGGCTTCGA CACCACGATC CGCGCGGCGC GGATCGCGCC GATCATGGCG
TGGGTGCAGG CGCGCTTCCC GCACGCGATC GATCTCGAAC GCGCGGAACC CTGGGCCGGG
TTGCGCCCCG CCACGCCGGG AAACGTGCCA CTGATCGGAC GCAGCGCGCG CCCCGGGCTA
TGGCTCAACA CCGGCCATGG CACGCTGGGA TGGACGCTGG CCTGCGGTTC GGCCGCCGCA
CTGGCGGATC TGATGAGCGG GCGCAGGCCG GAGGTGGCGT TTCCTTTCCT CGCGGCGGCG
GAGGTCTAG
|
|---|
| Protein sequence | MHVMVLGAGL SGVTTAWYLT RAGFQVSLVD RQPGAGLETS FANGGQISIS HPEPWANPGA
PAQVLRWLGR ADAPLKFRPH RALAQWTWGL RFLLECLPAR AHRNTVAIAA LALASGQRLR
ALRAELGLEY DQLERGILHL FYSRGEFAKA PARAAQLRAF GIAAEVLDRD ACLEREPALA
TCAGSLAGGI FAQGDESGDA HKFTRALAHR LEEGGVVLHR ETEVSALETG SGGRVVGARV
RRADGSVDSL RADACVLCLG SHGPRLAAPL GLRLPIYPVK GYSITAPVLE PALAPYVSLT
DESRRIVCSR LGDRLRVAGT AELDGFDTTI RAARIAPIMA WVQARFPHAI DLERAEPWAG
LRPATPGNVP LIGRSARPGL WLNTGHGTLG WTLACGSAAA LADLMSGRRP EVAFPFLAAA
EV
|
|---|
| |