| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmz1t_0704 |
|---|
| Symbol | |
|---|
| ID | 7083933 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thauera sp. MZ1T |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011662 |
|---|
| Strand | - |
|---|
| Start bp | 787892 |
|---|
| End bp | 789415 |
|---|
| Gene Length | 1524 bp |
|---|
| Protein Length | 507 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 643697730 |
|---|
| Product | threonine dehydratase |
|---|
| Protein accession | YP_002354372 |
|---|
| Protein GI | 217969138 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1171] Threonine dehydratase |
|---|
| TIGRFAM ID | [TIGR01124] threonine ammonia-lyase, biosynthetic, long form
[TIGR02079] threonine dehydratase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCTCCA CTCCCGATTA CCTGGAACGC ATCCTCAACG CGCAGGTGTA CGACGTCGCC
GTCGAGACAC CGCTCGACCT CGCCACCAAC CTGTCGGCGC GCACGCACAA CCGCATCTAC
TTCAAGCGCG AGGACATGCA GCCGGTGTTC AGCTTCAAGA TCCGCGGCGC CTACAACAAG
ATGGCGAACC TGTCGCCGCA GGCCTTGAAG CGCGGCGTGA TCTGCGCCTC GGCGGGCAAC
CACGCCCAGG GCGTGGCGCT GTCGGCGGCC AGGCTGGGCG TGCGCGCGGT GATCGTGATG
CCGAGCACCA CGCCGCAGAT CAAGATCGAC GCGGTCAAGG CGCGCGGCGG CGAGGTCGTG
CTCGCAGGCG AATCCTATTC CGACGCCTAC ACGCACGCGC TCGAGCTCGA GAAGAGCGAG
AAACTCACCT TCGTCCACCC CTTCGACGAC CCCGACGTGA TCGCAGGCCA GGGCACGGTG
GGCCTGGAGA TCCTGCGCGC GCACCCGAAG CCGATCCACG CGGTGTTCTG CTGTGTCGGC
GGCGGCGGGC TGATCGCCGG CGTGGCGGCC TACATCAAGC GCCTGCGCCC GGAGACGAAG
ATCATCGGCG TCGAGGCGGT GGACGCCGAC GCGATGACGC GCTCGCTCGC CGCGGGCAAG
CGCATCGCGC TCGAGCAGGT CGGCATCTTC GCCGACGGCG CCGCCGTCAA GGAGGTCGGT
GCCGAGACCT TCCGCCTGTG CCAGCAGTAT GTGGACGAGA TGATCGTGGT CGACAACGAC
GCCATCTGCG CCGCGATCAA GGACGTCTTC GAGGACACCC GCTCCATCCT CGAGCCCGCC
GGCGCGCTCG CCGTCGCCGG CGCCAAGGAG TACGCCCGCC GCAACAAGCT GCGCGACAAG
AGCCTGGTGG CGGTGGCCTC GGGGGCCAAC ATGAACTTCG ACCGCCTGCG CTTCGTCGCC
GAGCGCGCCG AGCTCGGCGA GCAGCGCGAG GCCGTGCTCG CGGTGACCAT CCCCGAGAAG
CCGGGCTCCT TCCGCAAGTT CATCAGCGTG CTCGGCAACC GCAACATCAC CGAGTTCAAC
TACCGCTACG CCGACGCCGA GCGCGCCCAC ATCTTCGTCG GCGTCACCGT GCACAACCGC
AGCGAGGTCG GACGCCTGGT CGAGATGCTC GAGCGCCACG AGCTGCCTGC GCTCGACCTC
ACCGACGACG AGATGGCCAA GTCGCACGTG CGCTACATGG TGGGCGGACG CGCACCGCAG
GTGGAAAACG AGGTGGTATA CCGCTTCGTC TTCCCCGAGC GCCCGGGCGC GCTGATGAAT
TTCCTCTCCA ACCTGCGCTC GGACTGGAAC ATCTCGCTGT TCCACTACCG CAACCACGGC
TCCGACTTCG GCCGCGTGCT GGTCGGCATG CAGGTGCCGC CGGCCGACAA GGACGCCTTC
GACGCCTTCC TGCAGCGGCT CGGCTACGAC TACGTGGCCG AGACCGACAA CCCCGCCTAC
CGCATGTTCC TGTCCGGGAG CTGA
|
|---|
| Protein sequence | MSSTPDYLER ILNAQVYDVA VETPLDLATN LSARTHNRIY FKREDMQPVF SFKIRGAYNK
MANLSPQALK RGVICASAGN HAQGVALSAA RLGVRAVIVM PSTTPQIKID AVKARGGEVV
LAGESYSDAY THALELEKSE KLTFVHPFDD PDVIAGQGTV GLEILRAHPK PIHAVFCCVG
GGGLIAGVAA YIKRLRPETK IIGVEAVDAD AMTRSLAAGK RIALEQVGIF ADGAAVKEVG
AETFRLCQQY VDEMIVVDND AICAAIKDVF EDTRSILEPA GALAVAGAKE YARRNKLRDK
SLVAVASGAN MNFDRLRFVA ERAELGEQRE AVLAVTIPEK PGSFRKFISV LGNRNITEFN
YRYADAERAH IFVGVTVHNR SEVGRLVEML ERHELPALDL TDDEMAKSHV RYMVGGRAPQ
VENEVVYRFV FPERPGALMN FLSNLRSDWN ISLFHYRNHG SDFGRVLVGM QVPPADKDAF
DAFLQRLGYD YVAETDNPAY RMFLSGS
|
|---|
| |