Gene Dtur_0560 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDtur_0560 
Symbol 
ID7083222 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDictyoglomus turgidum DSM 6724 
KingdomBacteria 
Replicon accessionNC_011661 
Strand
Start bp560025 
End bp562025 
Gene Length2001 bp 
Protein Length666 aa 
Translation table11 
GC content36% 
IMG OID643457638 
Producthydrogenase, Fe-only 
Protein accessionYP_002352464 
Protein GI217966958 
COG category[C] Energy production and conversion
[R] General function prediction only 
COG ID[COG1905] NADH:ubiquinone oxidoreductase 24 kD subunit
[COG4624] Iron only hydrogenase large subunit, C-terminal domain 
TIGRFAM ID[TIGR02512] hydrogenases, Fe-only 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00291892 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGATAT TTGTGGATGG AAAAGAAGTA ATAATAAAAG ATGATGAAAG AAATCTTCTT 
GAGGCTTTAA AAAATGTAGG TATTGAAATA CCAAATCTAT GTTATCTTTC GGAGACATCA
GTTTACGGGG CTTGTAGGTT ATGCCTCGTA GAAGTGGATG GAAAAAGTAT AGTTACCTCT
TGTAATCTAA AGCCTTATGA AGGAATGGTT GTTAGAACAA ATACTCCTGA GATATATGAA
ATAAGAAAAG GAATTCTTGA ACTTCTTCTT GCCTCTCATA ATAGAGATTG TACCACCTGT
GAGAGGAATG GCAGCTGCAA ATTGCAGGAA TATGCAGAGG CTTTTGGTAT AAGAAAGATA
AGATTTGATA ATATTCTCAA AGATGGTGGA ATGGACAATA AGTCGCCTAT AGTAAGGGAT
AATACAAAAT GTATCTTATG TGGTGATTGT GTTAGGGTTT GTGAAGAGGT TCAAGGAGTT
GCTGCCATAG ATATAGCAGG AAGGGGTTTT CTATCAAAGG TTACTCCTGC CTTTGGGCAT
AGCCTTTCTG AGGTGGAGTG TGTATATTGT GGGCAGTGTG TTGCTTATTG TCCCACAGGA
GCTTTATCTA TAAGAAATGA TATTGATAAG CTTTATAAGG TTTTAAAGAG TAAGAAAAAA
GTAGTCATAG GAATGATTGC GCCAGCGGTA AGATCTGCTA TTCAGGAAGA GTTTAAGTTA
GAGTCCGATC TTTTTATTGC AGGAAGGTTA AATACTTTCT TAAAAATGCT TGGATTTTCA
AAAGTCTTTG AAGTACCTTT TGGGGCGGAT CTTGTGGCTT ATGAAGAGGC TCATGAGTTT
CTTAATAGAT TAGAAAAAGG AGAAAAACTT CCTCAGTTTA CTTCTTGTTG TCCTGCATGG
GTTAAATATG TGGAGGAATT TTATCCTTCA TATATTGATA ATCTATCCAC GGTAAGATCG
CCCCAACAGG CTATGGGAAG TGTCATAAAA GAGATTTATT CTAAGGAAAT AGGAGTTTCC
AAAGAGGATA TTTATTTAGT ATCCATAATG CCTTGTACTG CTAAAAAGTT TGAGGCTGAA
AGGGAAGAAC ATAAAGGGGT AGTTGACTTA GTAATTACTA CTAAAGAGCT TGCCCAAATG
ATTAAGGCAA GTGGTATTGA TATATCCTCT ACAAAGCCTG AGCCCTTTGA CAAACCCTTT
AACCTTTACT CTCAAGGAGG ACTTGATTTT GGAAAGACAG GAGGAGTTCT TGGGACAGTT
CTTGCAGTAA TAAATCACAA AGTAAAGGTT AAAAATGTGA AAGAGGAAGA GATAGATAAG
GGGATAAGGC TCTTTAATGT GGAACTCGCC GATGGAAGAA ATATAAAAGC TATGGCTGTA
CATAGCTTGG GTAAGGCAAA AAGAGTTTTA AAGGATATAA AGGAAGGGAT ACTTGATGTG
GATATAATAG AGGTTATGGC ATGTAGTTTT GGTTGTATTG GGGGAGGTGG ACAACCTTAT
CCTAATGACA GCAAAATAAG GCAAAAGAGA GCAAAGATAC TTTCTGATAT GGTAAATATA
AATCCTATAG CATCGCCTCA AGAAAATCCA TATCTTATGG AGCTTTATGA AAAATATTTA
GAGCATCCTT TAAGTCACAA AACTCATGAA ATCCTTCATA CATCCTACTC TCCCAAAAGG
AGAGTTCCAG AACAAGATAT AGAAATTCTC CCACTTCCTA TTCCAGAAGA AGAGAAGGTT
AAAGTAAGAG TATGTCTTGG AACATCCTGT TATCTCAAGG GTTCTTATAA AATTCTTTCT
GATCTTATTG AAATTGTAAG AAAGGAAGAA TGGGCTAAAA ACATAGAAGT AGTAGGTACT
TTTTGTACTG AAAATTGTAG TAATGCTCCT AATGTACTCA TAGATGATAT ACTTATAAGT
GGGGCTGATA CTAATAAAGT AAAGGAGATG TTGAGGGAGT ATGTCAGGAG AAAACAGGAA
GGAGTATCTG ATGTTTCCTA A
 
Protein sequence
MKIFVDGKEV IIKDDERNLL EALKNVGIEI PNLCYLSETS VYGACRLCLV EVDGKSIVTS 
CNLKPYEGMV VRTNTPEIYE IRKGILELLL ASHNRDCTTC ERNGSCKLQE YAEAFGIRKI
RFDNILKDGG MDNKSPIVRD NTKCILCGDC VRVCEEVQGV AAIDIAGRGF LSKVTPAFGH
SLSEVECVYC GQCVAYCPTG ALSIRNDIDK LYKVLKSKKK VVIGMIAPAV RSAIQEEFKL
ESDLFIAGRL NTFLKMLGFS KVFEVPFGAD LVAYEEAHEF LNRLEKGEKL PQFTSCCPAW
VKYVEEFYPS YIDNLSTVRS PQQAMGSVIK EIYSKEIGVS KEDIYLVSIM PCTAKKFEAE
REEHKGVVDL VITTKELAQM IKASGIDISS TKPEPFDKPF NLYSQGGLDF GKTGGVLGTV
LAVINHKVKV KNVKEEEIDK GIRLFNVELA DGRNIKAMAV HSLGKAKRVL KDIKEGILDV
DIIEVMACSF GCIGGGGQPY PNDSKIRQKR AKILSDMVNI NPIASPQENP YLMELYEKYL
EHPLSHKTHE ILHTSYSPKR RVPEQDIEIL PLPIPEEEKV KVRVCLGTSC YLKGSYKILS
DLIEIVRKEE WAKNIEVVGT FCTENCSNAP NVLIDDILIS GADTNKVKEM LREYVRRKQE
GVSDVS