| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rleg2_1616 |
|---|
| Symbol | ispDF |
|---|
| ID | 6980352 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhizobium leguminosarum bv. trifolii WSM2304 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011369 |
|---|
| Strand | - |
|---|
| Start bp | 1640906 |
|---|
| End bp | 1642126 |
|---|
| Gene Length | 1221 bp |
|---|
| Protein Length | 406 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 643396341 |
|---|
| Product | bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein |
|---|
| Protein accession | YP_002281132 |
|---|
| Protein GI | 209549215 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0245] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
[COG1211] 4-diphosphocytidyl-2-methyl-D-erithritol synthase |
|---|
| TIGRFAM ID | [TIGR00151] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
[TIGR00453] 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.859066 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTGCAAA TGCCGTCCAA GCAACCGATA TCGGCTGGAA TTGTCATCGT TGCCGCCGGC
CGCGGCGAAC GTGCGGGATC CTCCAAGGAA GGCCCCAAGC AGTATCGCAT GATCGGCGGC
AAGCCGGTTA TCGTGCATAC GCTTGAAAAC TTCATGACAT GGGAGCCGGC AACTGAGATC
GTCGTCGTCA TTCACCCCGA TGACGAGGCG CTGTTTGCCA GAGCATTGCG CCATATCATT
TCGGCAACGC CGATCGAAAC GGTGCATGGC GGGCCGACCC GACAGCAATC GGTGCTGGCC
GGCCTTAGGC ACCTCAAGGA CAAGCGTATC AGCCATGTGC TGATCCACGA CGCCGTGCGG
CCGTTCTTCG ACCATGTGCT TCTCGACCGC ATTGCCGAAA GCCTCGACAA TGGCGCGCAG
GCGGTGCTGC CGGCGATCCC GGTCACCGAC ACGCTGAAAC GCGCCGACAG CGCCGGCACC
GTGCTGACGA CGGTTTCACG CGAGCATCTT TACGCGGCGC AGACGCCGCA ATCCTTCGCT
TTTGAAACGA TCCTCGATGC GCATGAGAAG GCGGCGGCAA GCGGGCGAAG CGATTTCACC
GACGACGCTT CGATCGCCGA ATGGGCGGGC ATTCCGGTGA CGATCGTCGC GGGCACGCCC
GATAACGTCA AGCTGACGGT CAAGAAGGAT ATCGCCATGG CGGACGACAA GCTATCGGCC
TCGCTGCTTC CCGACGTGCG CACCGGCAAC GGCTACGACG TGCACCAGCT GGAAGCGGGC
GACGGTGTCA CACTCTGCGG CGTGTTCATT CCGCACGACC AGAAGCTCAA AGGCCATTCG
GATGCCGACG TCGCGCTGCA CGCGCTGACG GACGCGCTGC TTGCCACCTG CGGCGCCGGC
GATATCGGCG ATCATTTCCC GCCCTCCGAC CCGCAATGGA AGGGGGCGGC CTCGCGCATC
TTCATCGAGC ACGCCGCCCG GATCGTGCGC GAGCACGGCG GCACGATCAT GAATGCCGAT
GTCTCACTGA TCGCCGAGGC GCCGAAGGTC GGGCCTCATC GCGAGAGCAT GCGGATGAGA
CTGTCGGAGT ATCTCGGCAT CGATATCGAG CGCTGCTCGG TCAAGGCGAC GACCAACGAG
ACCATCGGCT TCGTCGGCCG GCGCGAAGGC ATCGCGGCAA TCGCCACGGC GACCGTCGTC
TATCGCGGGG TGAAACGATG A
|
|---|
| Protein sequence | MLQMPSKQPI SAGIVIVAAG RGERAGSSKE GPKQYRMIGG KPVIVHTLEN FMTWEPATEI
VVVIHPDDEA LFARALRHII SATPIETVHG GPTRQQSVLA GLRHLKDKRI SHVLIHDAVR
PFFDHVLLDR IAESLDNGAQ AVLPAIPVTD TLKRADSAGT VLTTVSREHL YAAQTPQSFA
FETILDAHEK AAASGRSDFT DDASIAEWAG IPVTIVAGTP DNVKLTVKKD IAMADDKLSA
SLLPDVRTGN GYDVHQLEAG DGVTLCGVFI PHDQKLKGHS DADVALHALT DALLATCGAG
DIGDHFPPSD PQWKGAASRI FIEHAARIVR EHGGTIMNAD VSLIAEAPKV GPHRESMRMR
LSEYLGIDIE RCSVKATTNE TIGFVGRREG IAAIATATVV YRGVKR
|
|---|
| |